PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_1840V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 508aa    MW: 55827 Da    PI: 5.6087
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_1840V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.11.3e-31225283260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        dDgy+WrKYGqK+vk+s++pr+YYrCt+a+Cpv+k+vers edp ++++ Yeg+H+h+k
  Pp3c11_1840V3.3.p 225 DDGYKWRKYGQKPVKSSPHPRNYYRCTTANCPVRKRVERSIEDPGLIVTSYEGTHTHPK 283
                        8********************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-32209283IPR003657WRKY domain
SuperFamilySSF1182902.09E-28217283IPR003657WRKY domain
PROSITE profilePS5081130.503219284IPR003657WRKY domain
SMARTSM007743.2E-36224283IPR003657WRKY domain
PfamPF031063.5E-25225282IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MLMTDESMAL EEVRKECKET DDCSDSMNQS SREGDEPEAS LEESTDQANV WAQQLFESQY  60
LDLSGASPRG LMSPKFSEMG GFADLGTLCA SPLFSDQLKF LQSWSPKVIP NTVSAWGSGG  120
KTASTSEIVS TSEKSAESDP SSSDFMITSD STGTGSGDEA KTTRKRKSVE RDEGIDGSDG  180
DDVVKEQETS NSSRSMEQGQ KMKGPKRPRE PRYEFKTRSE VDVIDDGYKW RKYGQKPVKS  240
SPHPRNYYRC TTANCPVRKR VERSIEDPGL IVTSYEGTHT HPKINRPKNS SGVGWTSNEF  300
EGPQDLWSQV QNGIPATTSG LPDLGPHQDN LAHLPNLGNL FSAWPTLPFN LAQPPPRLQD  360
NVSMIMAYQL VRLQFELQAR IQQFMSYNAA QQGLAGGLSK NPFTNNPQGL PQFPLPDLSR  420
LLQNYADLAA EPKQVPTPEP LNPSSLLSRR LNAARLRTSS LNPNTQKPNT LRNLATQQSM  480
EGPQDAGPDL KRKLSGPGLP PRPSRSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-23216281974Probable WRKY transcription factor 4
2lex_A2e-23216281974Probable WRKY transcription factor 4
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162167TRKRKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.6080.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8896250.0DQ889625.1 Physcomitrella patens WRKY transcription factor 6 (WRKY6) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024389465.10.0uncharacterized protein LOC112288935 isoform X1
TrEMBLA0A2K1JT300.0A0A2K1JT30_PHYPA; Uncharacterized protein
STRINGPP1S39_217V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.14e-33WRKY DNA-binding protein 23