PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c11_20170V3.2.p

Common Name

PHYPADRAFT_166708

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bHLH

Protein Properties

Length: 310aa MW: 34246.5 Da PI: 7.4167

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c11_20170V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.7	7.4e-07	6	53	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + rEr RRd++N+ f++L +l + + +K++K +iL + + +k+L Pp3c11_20170V3.2.p 6 LQKADRERLRRDHLNEQFAKLAGVLDPiR-----PKNDKGTILSEGILALKEL 53 56779****************999955.....8******9877766666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.76E-10	3	68	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.4E-10	3	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.395	3	53	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.72E-5	4	58	No hit	No description
Pfam	PF00010	1.9E-4	6	53	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MPARKLQKAD RERLRRDHLN EQFAKLAGVL DPIRPKNDKG TILSEGILAL KELRAEIARL 60 KSEQIALRDE SRDLTVERCE LQEEKTLLET ETERLEDLRK QNSENLSALA GWKMDHPGVL 120 TSSQYPCPLP VSSMTKSSPP SKDIHQDPSS DQTHHAPDSS FLPAAPFSTF LHPAYQTYGV 180 FGSRKSPFMS YNHYSHPGHT THVERPAARY PAPIHPTPIY PVKGAQTKST EPSVVATELQ 240 LQTPGLPPSP THQQSLSGNE QREKRVDRAL DVLRDSGIDG TKAASCNDNF APQLSLSSNA 300 LALQVVQSV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.3002	0.0	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024389006.1	0.0	transcription factor bHLH121-like isoform X3
TrEMBL	A0A2K1JVG1	0.0	A0A2K1JVG1_PHYPA; Uncharacterized protein
STRING	PP1S123_2V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	4e-24	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pp3c11_20170V3.2.p
Entrez Gene	5933486

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]