PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_20550V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 250aa    MW: 28303 Da    PI: 9.7301
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_20550V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.3e-1487132555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h ++Er+RR+++N++f +Lr+l+P        K +K++ L  A+++Ik+Lq
  Pp3c11_20550V3.3.p  87 HMMAERKRREKLNDRFVTLRSLVPYV-----SKQDKVSLLGDAIDFIKDLQ 132
                         889**********************6.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.44482131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-1786142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.06E-1886144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.76E-1386136No hitNo description
PfamPF000101.0E-1187132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-1688137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MTSGQARARA GARRSAFQRW DYARLTKPPH TKQGSHQQQM LKTSLLSIPR LFTVRRGIDE  60
HDEQLSGNAM ESAETADGHI QRGDGRHMMA ERKRREKLND RFVTLRSLVP YVSKQDKVSL  120
LGDAIDFIKD LQRQVEELES RRKISENPSK PRVEITVENN RAVFEISSPW RQDLLIAILE  180
TFVGTHMQVE DVAAKVSKDT FKATLKAKVT SSGIDDDDDD EDKKSIKQIR ETLLSVVNGN  240
NSPTFEKLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-1487142964Transcription factor MYC2
5gnj_B8e-1487142964Transcription factor MYC2
5gnj_E8e-1487142964Transcription factor MYC2
5gnj_F8e-1487142964Transcription factor MYC2
5gnj_G8e-1487142964Transcription factor MYC2
5gnj_I8e-1487142964Transcription factor MYC2
5gnj_M8e-1487142964Transcription factor MYC2
5gnj_N8e-1487142964Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19095ERKRRE
29196RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024387800.10.0transcription factor TT8-like isoform X1
TrEMBLA0A2K1JVH31e-180A0A2K1JVH3_PHYPA; Uncharacterized protein
STRINGPP1S31_380V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-25bHLH family protein