PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_21340V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 217aa    MW: 24455.8 Da    PI: 7.6648
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_21340V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY25.42.8e-08175196223
                         --SS-EEEEEEE--TT-SS-EE CS
                WRKY   2 dDgynWrKYGqKevkgsefprs 23 
                          D + WrKYG K++kgs+ pr 
  Pp3c11_21340V3.2.p 175 ADDHLWRKYGHKPIKGSPPPRY 196
                         699*****************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508119.948169195IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-6172196IPR003657WRKY domain
SuperFamilySSF1182901.14E-6172205IPR003657WRKY domain
SMARTSM007740.0017174212IPR003657WRKY domain
PfamPF031061.3E-4176196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MALFFECWLC MIEERDHDVE QSTCMGGSQR RSQTTLDMQA SMAAGAAIIR FQKVVSLLSK  60
TRHAFFPLGP DSLSNLFARQ LLPLQVSALS GASLSSGASR INHLQRNHHQ LQYFNLQLQL  120
WSSLPQGNQQ EYHTMFPDTL LGRSDLGRLL EKSSETTIIE SFTSQPAANL LTTIADDHLW  180
RKYGHKPIKG SPPPRYVEVD NYFCTSIYTH ILHTYP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379590.15e-15probable WRKY transcription factor 11 isoform X1
TrEMBLA0A2K1JVK15e-50A0A2K1JVK1_PHYPA; Uncharacterized protein
STRINGPP1S42_169V6.12e-14(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.24e-06WRKY DNA-binding protein 39