PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_21510V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ARR-B
Protein Properties Length: 553aa    MW: 60002 Da    PI: 5.9303
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_21510V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.72.2e-27202255155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         k+r++W+ eLH++Fv+av+ L G +kA+P++il++m+v+gLt+e+v+SHLQkYRl
  Pp3c11_21510V3.1.p 202 KARVVWSAELHQQFVNAVNYL-GVDKAVPRKILDIMNVQGLTRENVASHLQKYRL 255
                         68*******************.********************************8 PP
2Response_reg84.72.8e-28331411109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl+vdDepl +++++++l+  +y  v+++ ++++al++l+e++  +Dl++ D+ mp+mdG++ll+ i  e  +lp+i++++ ge + + + 
  Pp3c11_21510V3.1.p  33 VLVVDDEPLALMIVERMLQICQY-TVTTCNSATKALAMLRENRnyFDLVISDVYMPDMDGFKLLEAIGLEL-DLPVIMMSGDGETDSVMKG 121
                         89*********************.***************999999**********************5544.6****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         ++ Ga d+l Kp+  +el++
  Pp3c11_21510V3.1.p 122 IRHGACDYLLKPVRLKELIN 141
                         *****************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521727.97E-3830155IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.9E-4130168No hitNo description
SMARTSM004483.8E-3231143IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011044.23332147IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-2433141IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.99E-3034146No hitNo description
PROSITE profilePS5129410.818199258IPR017930Myb domain
SuperFamilySSF466894.48E-19200259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-28201259IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-24202255IPR006447Myb domain, plants
PfamPF002498.8E-7204254IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MVVMKPVNVR GVADDRMERL AHPEGFSPAG LKVLVVDDEP LALMIVERML QICQYTVTTC  60
NSATKALAML RENRNYFDLV ISDVYMPDMD GFKLLEAIGL ELDLPVIMMS GDGETDSVMK  120
GIRHGACDYL LKPVRLKELI NIWQHVVRKL VTPRDIPKEE SGEWDEFPKH QDNADFDSTA  180
RKRKERSEDV AQLVEDVNNL KKARVVWSAE LHQQFVNAVN YLGVDKAVPR KILDIMNVQG  240
LTRENVASHL QKYRLYLKRL IGVTPQPYPV ASFQAAENGT FGGTMQIQPG GRPAASTSTK  300
GLNLGGGASN SSIGGLSRSG VQIDAATLNA LVQLQSLQQQ KQLGPTAARS GLTTDVVNSQ  360
IPADPTGLQR LDSFELDLLM KTQHDASRQR GSGGSTDLAD LLNCSKDALP YMSNLRGQCE  420
LKPAVMGSTN PLVGSEPMTA MSMSNLRGVD DGGPSLGSTE AGRSHMVNKL GRDFSNSSPA  480
FFSSTSRSNG GAVSDSSFST NYGDIPDGPP SFLVASPPDL SLLGQLQAFD QVEFDYGQLS  540
QPRRSMSYSS KT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-21201260463ARR10-B
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.151810.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388632.10.0two-component response regulator ORR21-like isoform X1
TrEMBLA0A2K1JVL40.0A0A2K1JVL4_PHYPA; Uncharacterized protein
STRINGPP1S31_291V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.17e-95response regulator 2