PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_21510V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ARR-B
Protein Properties Length: 485aa    MW: 52576.2 Da    PI: 5.9599
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_21510V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like871.9e-27134187155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         k+r++W+ eLH++Fv+av+ L G +kA+P++il++m+v+gLt+e+v+SHLQkYRl
  Pp3c11_21510V3.3.p 134 KARVVWSAELHQQFVNAVNYL-GVDKAVPRKILDIMNVQGLTRENVASHLQKYRL 187
                         68*******************.********************************8 PP
2Response_reg51.26.8e-1867341109
                         HHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
        Response_reg  41 ekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                         ++ +Dl++ D+ mp+mdG++ll+ i  e  +lp+i++++ ge + + + ++ Ga d+l Kp+  +el++
  Pp3c11_21510V3.3.p   6 RNYFDLVISDVYMPDMDGFKLLEAIGLEL-DLPVIMMSGDGETDSVMKGIRHGACDYLLKPVRLKELIN 73 
                         3449*********************5544.6***********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001563.60E-19178No hitNo description
PROSITE profilePS5011031.364179IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23003.6E-262104No hitNo description
SuperFamilySSF521723.27E-23587IPR011006CheY-like superfamily
PfamPF000721.8E-14673IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5129410.818131190IPR017930Myb domain
SuperFamilySSF466893.76E-19132191IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-28133191IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-24134187IPR006447Myb domain, plants
PfamPF002497.3E-7136186IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MLRENRNYFD LVISDVYMPD MDGFKLLEAI GLELDLPVIM MSGDGETDSV MKGIRHGACD  60
YLLKPVRLKE LINIWQHVVR KLVTPRDIPK EESGEWDEFP KHQDNADFDS TARKRKERSE  120
DVAQLVEDVN NLKKARVVWS AELHQQFVNA VNYLGVDKAV PRKILDIMNV QGLTRENVAS  180
HLQKYRLYLK RLIGVTPQPY PVASFQAAEN GTFGGTMQIQ PGGRPAASTS TKGLNLGGGA  240
SNSSIGGLSR SGVQIDAATL NALVQLQSLQ QQKQLGPTAA RSGLTTDVVN SQIPADPTGL  300
QRLDSFELDL LMKTQHDASR QRGSGGSTDL ADLLNCSKDA LPYMSNLRGQ CELKPAVMGS  360
TNPLVGSEPM TAMSMSNLRG VDDGGPSLGS TEAGRSHMVN KLGRDFSNSS PAFFSSTSRS  420
NGGAVSDSSF STNYGDIPDG PPSFLVASPP DLSLLGQLQA FDQVEFDYGQ LSQPRRSMSY  480
SSKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-21133192463ARR10-B
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.151810.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388632.10.0two-component response regulator ORR21-like isoform X1
TrEMBLA0A2K1JVL40.0A0A2K1JVL4_PHYPA; Uncharacterized protein
STRINGPP1S31_291V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-74response regulator 2