PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_2240V3.2.p
Common NamePHYPADRAFT_72960
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 449aa    MW: 49684.6 Da    PI: 6.6839
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_2240V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.42.1e-14173266186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                        +W+++ + +L++a  e+ ++l rg+   + W+++++++          + g+ ++++qC+ k +nl+kryk ++e ++   s+  s++ +fd
  Pp3c11_2240V3.2.p 173 EWSENATTVLLQAFGEKYRALDRGNFTSKIWADIAARVnsrgsltgnLADGIPKTQEQCRIKVDNLKKRYKVEREKKRVSGSG-ASKWIFFD 263
                        5************************************************************************9999986555.559***** PP

           trihelix  84 qle 86 
                         ++
  Pp3c11_2240V3.2.p 264 MMD 266
                        998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.2E-19173268No hitNo description
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MMLQQRQHQQ QHPGDGGGAG AMDAMACDDH HVVVSRMDLA PQVQGLRMLD EQQEHEHQRI  60
LYGEKGLGDH THDEMGKGQH PGHVVVYGDR GHENGHEHAH AYAVEMGNGK HGVVDDMDAK  120
LGGLSAAMLR VDTEMEGRER QISDGDVGTA NSPQVGSQIG KLRGRSSRDP AIEWSENATT  180
VLLQAFGEKY RALDRGNFTS KIWADIAARV NSRGSLTGNL ADGIPKTQEQ CRIKVDNLKK  240
RYKVEREKKR VSGSGASKWI FFDMMDELIG ANPRHMRSGG GLGGADSPLG LEHGGTPLGI  300
RTSVEDGDRM YYLESAGGDG DQTSETIPKI SPIQGRRKRK RALEDLEREN VNAPALMALF  360
GDYNIPTSII DAMLQEDMDE YTLINSRDIM VLLDQLRSKH RLHIKLGPAE RIKQAIEAAK  420
EKKNSLALVL QHQQQQQQQQ QQQQQQQQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1335340RRKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388933.10.0uncharacterized protein LOC112288694
TrEMBLA0A2K1JT630.0A0A2K1JT63_PHYPA; Uncharacterized protein
STRINGPP1S39_263V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.16e-16sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]