PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_23740V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 710aa    MW: 78840 Da    PI: 6.8992
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_23740V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12578625355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         ++h ++ErrRR + ++ f  Lr+l+P+ +      K +Ka++L  A+ Y+k+Lq
  Pp3c11_23740V3.1.p 578 VNHMMAERRRRMKQKENFTALRRLVPTiS------KADKASTLIDAITYLKDLQ 625
                         5899***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.9E-1823162IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.4E-16574645IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.659575624IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.21E-12578629No hitNo description
PfamPF000101.8E-9578625IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-17579645IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-11581630IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MLSPTMNPRS GGVDTHAENL LLERLGILVD RLNWSYGVIW TLNPRTRVLD WTRGYFQVNT  60
QVGTASSAPR SNWDAQLFYT TYKSCSFAPG NGAVGRASVD GRRFWLTGDS VGQNAGTMEQ  120
SQFLRCAKIN TMICIPCIDS VLEMGTHIHV RENFQVMDQI HEVLSNDLLG VLPLQHTTSE  180
HACSWDTLMF QADSHLGFHQ DSAANNPSSL ALQQPSSEMM SRSISEMSLR FSEDLNRPFQ  240
SEFNLSDQVW RSAISSNLSL NSDIFMHGQQ DTQLDSAIDK VTTENLSTLH SHGGTPSTFL  300
MPNPNAPSNP AHAEADFHVS QQVNQRIMTQ SASHGLMVSQ ADRYRPWSGA ATSSSVSSQG  360
DSSARLSASP EPQQPQIHHN PLPNSQNSTL DRTSSSGTLR SLLNQNLRRT TSCGDQYEIQ  420
KAFSLFEAQE MQEHWRQQAG QQPELAGAQA ATMNDKVTAL KHDPGSLQRS TDDPPNLLKR  480
SSNVSLVNQV SKVAGVLLRR KSLSALEVLK AVDTYHRETA DKSLNLVQNI EEEPTGLATT  540
VTENITPNLR GRRRWGMEHA SSSRGQGPIH VGHDEAAVNH MMAERRRRMK QKENFTALRR  600
LVPTISKADK ASTLIDAITY LKDLQNKIQE MKASKEDINQ RCETLENKCR ELEDRNQQLV  660
AMLSINHPSS SNQLDTLKSE LLQSFFPSEL KTSKAAGNPT YSISSDYHM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388221.10.0uncharacterized protein LOC112288342 isoform X1
TrEMBLA0A2K1JW020.0A0A2K1JW02_PHYPA; Uncharacterized protein
STRINGPP1S31_58V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.12e-14bHLH family protein