PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_23740V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 554aa    MW: 61440.2 Da    PI: 6.6651
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_23740V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12422469355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         ++h ++ErrRR + ++ f  Lr+l+P+ +      K +Ka++L  A+ Y+k+Lq
  Pp3c11_23740V3.2.p 422 VNHMMAERRRRMKQKENFTALRRLVPTiS------KADKASTLIDAITYLKDLQ 469
                         5899***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-16418489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.659419468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9422469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.31E-12422473No hitNo description
Gene3DG3DSA:4.10.280.102.9E-17423489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-11425474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MDQIHEVLSN DLLGVLPLQH TTSEHACSWD TLMFQADSHL GFHQDSAANN PSSLALQQPS  60
SEMMSRSISE MSLRFSEDLN RPFQSEFNLS DQVWRSAISS NLSLNSDIFM HGQQDTQLDS  120
AIDKVTTENL STLHSHGGTP STFLMPNPNA PSNPAHAEAD FHVSQQVNQR IMTQSASHGL  180
MVSQADRYRP WSGAATSSSV SSQGDSSARL SASPEPQQPQ IHHNPLPNSQ NSTLDRTSSS  240
GTLRSLLNQN LRRTTSCGDQ YEIQKAFSLF EAQEMQEHWR QQAGQQPELA GAQAATMNDK  300
VTALKHDPGS LQRSTDDPPN LLKRSSNVSL VNQVSKVAGV LLRRKSLSAL EVLKAVDTYH  360
RETADKSLNL VQNIEEEPTG LATTVTENIT PNLRGRRRWG MEHASSSRGQ GPIHVGHDEA  420
AVNHMMAERR RRMKQKENFT ALRRLVPTIS KADKASTLID AITYLKDLQN KIQEMKASKE  480
DINQRCETLE NKCRELEDRN QQLVAMLSIN HPSSSNQLDT LKSELLQSFF PSELKTSKAA  540
GNPTYSISSD YHM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388221.10.0uncharacterized protein LOC112288342 isoform X1
TrEMBLA0A2K1JW020.0A0A2K1JW02_PHYPA; Uncharacterized protein
STRINGPP1S31_58V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-14bHLH family protein