PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_23740V3.5.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 562aa    MW: 62444.4 Da    PI: 6.6653
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_23740V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12430477355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         ++h ++ErrRR + ++ f  Lr+l+P+ +      K +Ka++L  A+ Y+k+Lq
  Pp3c11_23740V3.5.p 430 VNHMMAERRRRMKQKENFTALRRLVPTiS------KADKASTLIDAITYLKDLQ 477
                         5899***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-16426497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.659427476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9430477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.58E-12430481No hitNo description
Gene3DG3DSA:4.10.280.102.9E-17431497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-11433482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MVRENFQVMD QIHEVLSNDL LGVLPLQHTT SEHACSWDTL MFQADSHLGF HQDSAANNPS  60
SLALQQPSSE MMSRSISEMS LRFSEDLNRP FQSEFNLSDQ VWRSAISSNL SLNSDIFMHG  120
QQDTQLDSAI DKVTTENLST LHSHGGTPST FLMPNPNAPS NPAHAEADFH VSQQVNQRIM  180
TQSASHGLMV SQADRYRPWS GAATSSSVSS QGDSSARLSA SPEPQQPQIH HNPLPNSQNS  240
TLDRTSSSGT LRSLLNQNLR RTTSCGDQYE IQKAFSLFEA QEMQEHWRQQ AGQQPELAGA  300
QAATMNDKVT ALKHDPGSLQ RSTDDPPNLL KRSSNVSLVN QVSKVAGVLL RRKSLSALEV  360
LKAVDTYHRE TADKSLNLVQ NIEEEPTGLA TTVTENITPN LRGRRRWGME HASSSRGQGP  420
IHVGHDEAAV NHMMAERRRR MKQKENFTAL RRLVPTISKA DKASTLIDAI TYLKDLQNKI  480
QEMKASKEDI NQRCETLENK CRELEDRNQQ LVAMLSINHP SSSNQLDTLK SELLQSFFPS  540
ELKTSKAAGN PTYSISSDYH M*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388221.10.0uncharacterized protein LOC112288342 isoform X1
TrEMBLA0A2K1JW020.0A0A2K1JW02_PHYPA; Uncharacterized protein
STRINGPP1S31_58V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-14bHLH family protein