PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_25660V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 693aa    MW: 76779 Da    PI: 8.5128
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_25660V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.3e-09507553354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +ah  +Er RR++ ++++++L  ++P       +K +K+++L  ++eYI +L
  Pp3c11_25660V3.3.p 507 EAHRRAERTRREKSKKKLDTLINIVPII-----TKRDKISVLSSTIEYIGHL 553
                         69*************************7.....6*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.23E-11503564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.033504553IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-6507553IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.65E-9507558No hitNo description
Gene3DG3DSA:4.10.280.104.8E-11507566IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-6510559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MTLQPRNSAS QLLEMEIVRQ KLKELVSLGW TYGVLWKIGP DRRTPVWYQG YFNESMQVDI  60
SQKQQFESVY RHCRFTPTRP GYAYIAWHRQ APCWWTGHSE PVLTDENKEM FLRQAGIQTL  120
VCFPGRAKID GSCFCIEIAS TSLVSDTEMY RNAIQHFIDE SIGPYMYGLA PPSIPATSRN  180
LLRELAGTVL EDVVQTSPAM AISGSQSGLL GSLPLTAAGV VSVELAHENS ALLTGITTNA  240
TTGLDEAFEA MQYGNIVSSE EPYYHWTMPR SIIPYEDQSA LIPFQDMPNN PTSLLDFEML  300
GQLHSTDGAE LSGKELQQRV ALERAPKQIL PSTTTGYPSS NVFGSSWKGK EILEAENLEF  360
AKKSPESRLL PQRNTYALGR LALSSSQSVL AELPRVDLQT SPAVPSISNL DTQILPSGWS  420
SIHQMPLWHS LRSAFRAFGP LRSSTSSRIR KFPKRQPLIH QWVMRRLPNW ETQRGRSQSD  480
QNQRGVGSGN SDATLGNYYN PRSPNSEAHR RAERTRREKS KKKLDTLINI VPIITKRDKI  540
SVLSSTIEYI GHLRSRISNL EKEQEAALGA TGAKEATTSV AKFRTGKELG SFNTEIAAGP  600
SSSTTTPVVV EGILGGETMN INVETNYHAR SLIQLLSILQ ELDLGIISVA SVCENVRFRA  660
AVCVKNSRKS RTTPDSLQAT LLRVLEGNCG SE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1509523RRAERTRREKSKKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024389617.10.0uncharacterized protein LOC112288996 isoform X1
TrEMBLA9SYP20.0A9SYP2_PHYPA; Predicted protein
STRINGPP1S138_68V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.13e-06bHLH family protein