PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_25660V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 545aa    MW: 59599.4 Da    PI: 8.9459
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_25660V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.26.8e-09359405354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +ah  +Er RR++ ++++++L  ++P       +K +K+++L  ++eYI +L
  Pp3c11_25660V3.4.p 359 EAHRRAERTRREKSKKKLDTLINIVPII-----TKRDKISVLSSTIEYIGHL 405
                         69*************************7.....6*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.9E-12355416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.033356405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-8359410No hitNo description
PfamPF000101.3E-6359405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-11359418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-6362411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MYRNAIQHFI DESIGPYMYG LAPPSIPATS RNLLRELAGT VLEDVVQTSP AMAISGSQSG  60
LLGSLPLTAA GVVSVELAHE NSALLTGITT NATTGLDEAF EAMQYGNIVS SEEPYYHWTM  120
PRSIIPYEDQ SALIPFQDMP NNPTSLLDFE MLGQLHSTDG AELSGKELQQ RVALERAPKQ  180
ILPSTTTGYP SSNVFGSSWK GKEILEAENL EFAKKSPESR LLPQRNTYAL GRLALSSSQS  240
VLAELPRVDL QTSPAVPSIS NLDTQILPSG WSSIHQMPLW HSLRSAFRAF GPLRSSTSSR  300
IRKFPKRQPL IHQWVMRRLP NWETQRGRSQ SDQNQRGVGS GNSDATLGNY YNPRSPNSEA  360
HRRAERTRRE KSKKKLDTLI NIVPIITKRD KISVLSSTIE YIGHLRSRIS NLEKEQEAAL  420
GATGAKEATT SVAKFRTGKE LGSFNTEIAA GPSSSTTTPV VVEGILGGET MNINVETNYH  480
ARSLIQLLSI LQELDLGIIS VASVCENVRF RAAVCVKNSR KSRTTPDSLQ ATLLRVLEGN  540
CGSE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1361375RRAERTRREKSKKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024389620.10.0uncharacterized protein LOC112288996 isoform X4
TrEMBLA0A2K1JW950.0A0A2K1JW95_PHYPA; Uncharacterized protein
STRINGPP1S138_68V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-06bHLH family protein