PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_3110V3.2.p
Common NamePHYPADRAFT_73006
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 773aa    MW: 86268.5 Da    PI: 6.9261
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_3110V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.8e-07713767247
                        SSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                        ++WT  E++ l+++v+++  +     +Wk+I +         Rt+ ++k++w+++
  Pp3c11_3110V3.2.p 713 LPWTRAEEDALKEGVRLYSYNgawgfQWKRILEFGEgrfdPSRTDVDLKDKWRNL 767
                        69******************************99889****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579037.53E-12375438IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.0E-10386442IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.698390439IPR019787Zinc finger, PHD-finger
SMARTSM002490.0019392437IPR001965Zinc finger, PHD-type
SuperFamilySSF466891.06E-8709769IPR009057Homeodomain-like
CDDcd116602.31E-13714769No hitNo description
Gene3DG3DSA:1.10.10.601.0E-9714769IPR009057Homeodomain-like
PROSITE profilePS500907.503714768IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 773 aa     Download sequence    Send to blast
MLNIAQIVLS VLREDVAEGD KDWVYYASEL ERIFAEEADP RVLARKRELS ALLKSKDQTN  60
DVAAYLKKYS LKKLKNDLNM FIDERRATFK TVFLDQLSRD FLDSNGTPFL EALGDMEKSG  120
ELDPRAKQAH LNPANVVSLQ TNQDIDLQRV GHESRNGHDM TETGGQGIVL GTAAVSDKKS  180
PRRMILPTRD SSDDVSQEVQ NCNVASKQSK TPTSVSLAVP SKEGMPLSRN FGLEVMRSCS  240
PHLSVSIEGE KIHQTRKPSR TNKNVTISGV ESDADTQVVE RLNIDDEKCE GEGYRKEGAQ  300
SPSHSESGSD RRHFQKTVAT QVVRRKTTGL PSERRTLEPD RKRASTCSPE AKIAERRDNE  360
KSVIKNESLP LDAEEIYEVD YLDIGDDGQE EICHKCGLDG DLTCCDRCPI SMHLKCIEVL  420
GLRVPKSNED WCCPICVAVK ASQGAREAAK AAAVAREELK AFIKESSKKR SFSEDDAQYH  480
SGQEKAVKRS KSSLIPPQPD DIDTTLKLQH NSEENPELRY TDAQLDSGRR NESLLPILRK  540
SSNQLKQRGE VESESTGLNL SSVGIALRVN QKFSNGSPKS LVKYDPDSIQ RGPAKAVPFN  600
EDMKKVQRVP DTPDQNTSRR HPIAASTSGR KRKKTDIYRR VAKRKVLEDD SDEASLQREA  660
GVQEPGSGAG GCGEVDGDDL ELDEDCVGKS EYVERSGYFS GRRRIPGRRR IPLPWTRAEE  720
DALKEGVRLY SYNGAWGFQW KRILEFGEGR FDPSRTDVDL KDKWRNLVKG VS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1629633RKRKK
2638644RRVAKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388799.10.0uncharacterized protein LOC112288631
RefseqXP_024388800.10.0uncharacterized protein LOC112288631
TrEMBLA0A2K1JTA20.0A0A2K1JTA2_PHYPA; Uncharacterized protein
STRINGPP1S39_365V6.10.0(Physcomitrella patens)
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]