PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_480V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 446aa    MW: 50355.2 Da    PI: 8.1975
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_480V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.21.6e-06181205123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       ++C+  +Cg+ ++r+++L+rH+ tH
  Pp3c11_480V3.3.p 181 FSCSfeNCGRQYKRQDHLNRHLLTH 205
                       899999*****************99 PP
2zf-C2H216.62.2e-05211234223
                       EET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                        C+   C+ sF+ + nL+rH+r+H
  Pp3c11_480V3.3.p 211 FCTweGCDLSFNVNANLQRHLRLH 234
                       688889****************99 PP
3zf-C2H2218.8e-07254278223
                       EET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                       +C+   Cgk+F+ +s+L++Hi + H
  Pp3c11_480V3.3.p 254 TCSepGCGKVFKYPSLLQTHIESvH 278
                       68888****************9988 PP
4zf-C2H214.10.00014289311423
                       T..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   4 p..dCgksFsrksnLkrHirt.H 23 
                           Cg+ F + s+Lk Hi++ H
  Pp3c11_480V3.3.p 289 VepGCGEIFDSLSQLKAHIKVaH 311
                       4459****************988 PP
5zf-C2H212.80.00037343367223
                       EET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                       +Cp   C  s++ ksnL +Hir+ H
  Pp3c11_480V3.3.p 343 RCPhpGCVHSYTKKSNLDTHIRViH 367
                       79999*****************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525401.11E-737108IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3003.9E-737111IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5015711.988153180IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-6153179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.4153175IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.26E-11165207No hitNo description
Gene3DG3DSA:3.30.160.608.1E-12180207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0057181205IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.157181207IPR007087Zinc finger, C2H2
PROSITE patternPS000280183205IPR007087Zinc finger, C2H2
SuperFamilySSF576675.15E-5210234No hitNo description
Gene3DG3DSA:3.30.160.608.2E-7210234IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0028210234IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743210234IPR007087Zinc finger, C2H2
PROSITE patternPS000280212234IPR007087Zinc finger, C2H2
SMARTSM003550.0017253278IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.806253283IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-4254274IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280255278IPR007087Zinc finger, C2H2
SMARTSM003550.77286311IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280288311IPR007087Zinc finger, C2H2
SMARTSM0035543314335IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.59E-6325380No hitNo description
Gene3DG3DSA:3.30.160.608.7E-7325365IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.824342372IPR007087Zinc finger, C2H2
SMARTSM003550.048342367IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280344367IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.6E-4366395IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.4373399IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280375399IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MSPVYFYQWV RIRVFLGSLV RTQAKAQAAD TESFQSKTPS GLTLQYLICE GDEKPSQLVH  60
FLCQHRQNKI ILYFMTCACV DYWAIMLPQL ESLSGLQAVA LHGKMKQDSE EGIRIYSEEN  120
DSSVRPAEES NSNEAAGDNE DSKGGEGSPR ERFKCVVCGI TPLKPSLLKQ HLRAHSAERP  180
FSCSFENCGR QYKRQDHLNR HLLTHKGNLF FCTWEGCDLS FNVNANLQRH LRLHKKWDSN  240
VLRGTKVEDN ARLTCSEPGC GKVFKYPSLL QTHIESVHDS SPVTQGICVE PGCGEIFDSL  300
SQLKAHIKVA HCYVVCETCG VSMLKNKLKS HTQTHEGVQT LIRCPHPGCV HSYTKKSNLD  360
THIRVIHQNV KPYDCSHAGC EMRFAYKVVR DKHEKSGVHA QPELGGNFEA EDLEFSLKSR  420
GGRKRLRLNQ VDDLLPRKHV SQPHE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A3e-1415830920158PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D3e-1415830920158PROTEIN (TRANSCRIPTION FACTOR IIIA)
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.155960.0gametophore
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5747351e-170EU574735.1 Physcomitrella patens TFIIIA exon-skipping isofom mRNA, partial cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024387832.10.0transcription factor IIIA-like isoform X1
TrEMBLA0A2K1JSY00.0A0A2K1JSY0_PHYPA; Uncharacterized protein
STRINGPP1S39_62V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29811627
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.25e-60transcription factor IIIA