PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_7140V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 407aa    MW: 45435.3 Da    PI: 9.1492
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_7140V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.41.1e-07199244454
                        HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         h  rEr+RRd++ s+f+ L +llP  +      K + ++i+   + ++k+L
  Pp3c11_7140V3.3.p 199 DHILRERQRRDDMTSKFAILESLLPIgL------KRDRSTIVDDSIVHVKNL 244
                        5999*********************977......777777777777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.5E-9192263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-11192261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.71E-7193246No hitNo description
PROSITE profilePS5088811.655195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-5200244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-5201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MLTLGEARNM GLSTSGFQPG RIPNFYGRES YGMVGGNVGL QHSLSDLMPN TSLQEEVVEH  60
QCAVLQDADI LGLMNGRGYG TCMTSMGFWQ PSTGIDRGLG LLEDVLPQVI DQENHYNAPV  120
STDSSLPYGS IPRVGLGETH VGISSVPLQH QVAREQWVEG TPTARQPVER DVGLSPVNLK  180
PCKIIEKQVK SKRPSEQVDH ILRERQRRDD MTSKFAILES LLPIGLKRDR STIVDDSIVH  240
VKNLHHRIQI LQQRRLQLQQ AVAVKSVGKI ANGCRRVALK VLQPYPVSPS KLQERPVATP  300
RSTLPQEELS KIHSLLRNCL EKIEVHADLP HQVVIELVCR HQPRLQSNIL QYLEHMNLDI  360
THCCITKVAH RLVCVITAKV QFKHRNIFNS FSGFNSAVRA RCVSTR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.77060.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024389738.10.0uncharacterized protein LOC112289044
TrEMBLA0A2K1JTS00.0A0A2K1JTS0_PHYPA; Uncharacterized protein
STRINGPP1S262_39V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9572213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.15e-07bHLH family protein