PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_13020V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family LBD
Protein Properties Length: 387aa    MW: 41447.6 Da    PI: 6.9009
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_13020V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.65e-391562571101
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC+++C++apyf aeq ++kfa+vhk+FGasnv kll ++p+ +r da+ ++ yeA+ar++dPvyG+v++i++lqqq+++l
  Pp3c12_13020V3.1.p 156 PCGACKFLRRKCVRGCIFAPYFGAEQgAAKFAAVHKVFGASNVAKLLLHIPTPRRCDAVLTISYEAQARLSDPVYGCVATIFSLQQQVASL 246
                         7***********************9989*************************************************************** PP

              DUF260  91 kaelallkeel 101
                         +aela+++++l
  Pp3c12_13020V3.1.p 247 QAELAMVQAQL 257
                         *******9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.206155257IPR004883Lateral organ boundaries, LOB
PfamPF031956.0E-38156254IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
LAGSEGDSRS VSGWGLGSDV DLEDRGKRHS EESDEALRDR QELETWTREA ARDNLGNWHG  60
NEKDQLDNWS HHSAERKNPR GLETQNLDSN GGEPGASDST AGSADRDSAG ALDNVARTSS  120
PAGRARSAAG TTSHDYSSRR NAAGGGYSSS MSTGAPCGAC KFLRRKCVRG CIFAPYFGAE  180
QGAAKFAAVH KVFGASNVAK LLLHIPTPRR CDAVLTISYE AQARLSDPVY GCVATIFSLQ  240
QQVASLQAEL AMVQAQLADR HAHLQQTHHQ QRMVFNQPPP EYMQQHQHLG VQTHLSPTSG  300
LSMGMSGGTG AVGPYSSRVK EEGSYQLHGM QHAAHHYDIG MASNSLEPMS TEQSLLESMQ  360
KSRSGGLGGQ PDEGELQALA SLIRRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-351542579111LOB family transfactor Ramosa2.1
5ly0_B4e-351542579111LOB family transfactor Ramosa2.1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.99040.0protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390481.10.0uncharacterized protein LOC112289471
TrEMBLA0A2K1JQK50.0A0A2K1JQK5_PHYPA; Uncharacterized protein (Fragment)
STRINGPP1S261_2V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.14e-58LOB domain-containing protein 20