PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_13020V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family LBD
Protein Properties Length: 237aa    MW: 25553.1 Da    PI: 8.5984
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_13020V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601261.8e-3961071101
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC+++C++apyf aeq ++kfa+vhk+FGasnv kll ++p+ +r da+ ++ yeA+ar++dPvyG+v++i++lqqq+++l
  Pp3c12_13020V3.2.p   6 PCGACKFLRRKCVRGCIFAPYFGAEQgAAKFAAVHKVFGASNVAKLLLHIPTPRRCDAVLTISYEAQARLSDPVYGCVATIFSLQQQVASL 96 
                         7***********************9989*************************************************************** PP

              DUF260  91 kaelallkeel 101
                         +aela+++++l
  Pp3c12_13020V3.2.p  97 QAELAMVQAQL 107
                         *******9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.2065107IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-386104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MSTGAPCGAC KFLRRKCVRG CIFAPYFGAE QGAAKFAAVH KVFGASNVAK LLLHIPTPRR  60
CDAVLTISYE AQARLSDPVY GCVATIFSLQ QQVASLQAEL AMVQAQLADR HAHLQQTHHQ  120
QRMVFNQPPP EYMQQHQHLG VQTHLSPTSG LSMGMSGGTG AVGPYSSRVK EEGSYQLHGM  180
QHAAHHYDIG MASNSLEPMS TEQSLLESMQ KSRSGGLGGQ PDEGELQALA SLIRRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-3741079111LOB family transfactor Ramosa2.1
5ly0_B8e-3741079111LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.99040.0protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390481.11e-172uncharacterized protein LOC112289471
TrEMBLA0A2K1JQK51e-174A0A2K1JQK5_PHYPA; Uncharacterized protein (Fragment)
STRINGPP1S261_2V6.11e-174(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.13e-59LOB domain-containing protein 20