PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_14370V3.5.p
Common NameHB10
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HD-ZIP
Protein Properties Length: 878aa    MW: 95632.8 Da    PI: 6.472
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_14370V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.96.1e-171573357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        k  ++t+eq+e+Le++++++++ps  +r +L k+     +++ +q+kvWFqNrR +ek+
  Pp3c12_14370V3.5.p 15 KYVRYTQEQVEALERVYHECPKPSSIRRHQLIKESpilaNIEPKQIKVWFQNRRCREKQ 73
                        5678******************************9999*******************97 PP
2START151.67e-482024073203
                         HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
               START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                         aee+++e+++ka+ ++  W +++ +++g++ + +++ s+++ g a+ra+g+v  +    v e+l+d+++W ++++++e+l ++ +g  g++
  Pp3c12_14370V3.5.p 202 AEETLTEFLAKATGTAVDWIQLPGMKPGPDAIGIIAISHGCVGIAARACGLVALDIS-KVTEVLKDRPRWLQDCRRMEILGALPTGngGTI 291
                         78999****************************************************.8888888888*********************** PP

                         EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
               START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                         +l +++++a+++l+p Rd+ ++Ry+  l++g  vi+++S++  q  p+    +s+vR+e++pSg+li+p+++g++ +++v+h + + ++++
  Pp3c12_14370V3.5.p 292 ELLYTQMYAPTTLAPaRDYCTLRYTTILEDGNVVICERSLSGVQGGPTmppVQSFVRGEMYPSGYLIRPCDGGGCIIHVVDHYNNEPWSVP 382
                         ******************************************99999888899************************************** PP

                         HHHHHHHHHHHHHHHHHHHHHTXXX CS
               START 179 wllrslvksglaegaktwvatlqrq 203
                         ++lr+l++s ++  +k ++a+l+++
  Pp3c12_14370V3.5.p 383 EVLRPLYESPAVLSQKSTLAALRHL 407
                         *********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3861074IPR001356Homeobox domain
SuperFamilySSF466895.13E-161177IPR009057Homeodomain-like
SMARTSM003891.3E-131278IPR001356Homeobox domain
CDDcd000861.35E-151575No hitNo description
PfamPF000461.8E-141673IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-171773IPR009057Homeodomain-like
CDDcd146860.0010367103No hitNo description
PROSITE profilePS5084821.443191405IPR002913START domain
CDDcd088758.95E-79195411No hitNo description
SMARTSM002345.5E-38200410IPR002913START domain
Gene3DG3DSA:3.30.530.201.5E-20201405IPR023393START-like domain
SuperFamilySSF559612.61E-35202410No hitNo description
PfamPF018524.2E-45202407IPR002913START domain
PfamPF086709.0E-43732874IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 878 aa     Download sequence    Send to blast
MTETWKDQTM DASGKYVRYT QEQVEALERV YHECPKPSSI RRHQLIKESP ILANIEPKQI  60
KVWFQNRRCR EKQRKEATRL VSVNAKLTAL NKLLMEENER LAKHTSQLTL ENHALRQQIP  120
NLPFPDGRHR LPSQSPLKKE GAVNGGDESS TQGGICVKVH GQAGIASTDT SCDSAVTGGL  180
PHRLTPQHSP RDSSPAGLLA TAEETLTEFL AKATGTAVDW IQLPGMKPGP DAIGIIAISH  240
GCVGIAARAC GLVALDISKV TEVLKDRPRW LQDCRRMEIL GALPTGNGGT IELLYTQMYA  300
PTTLAPARDY CTLRYTTILE DGNVVICERS LSGVQGGPTM PPVQSFVRGE MYPSGYLIRP  360
CDGGGCIIHV VDHYNNEPWS VPEVLRPLYE SPAVLSQKST LAALRHLRRL AAEESGEGVP  420
RNGQHPAVLR TLCQRLTKGF NNAVNGFPDD GWEATISDGL DDVSVMLNAT PKSMEGQIAS  480
DKLLYSLGGG ILCAKASMLL QNVPSSLLIR FLREHRSEWA DYDIDANVAS FRSNGNGYVP  540
RCGGVSHVQL PLPLAYSGES GEILEVVKVE GHSSVQHMVL SRDTFLLQLC SGVDESAVGA  600
CAQLVFAPVD VALADDIPLL PSGFCVSPID TNVVDGFGLD RTLDLASTLE GGNDLRLNGD  660
AKSSNSPGQM RSVLTIAFQF AYEVHTRETV AAMARQYVRN VVASVQQVAM ALAPSRGAPP  720
PRQVPSNPDA LSLVRHVLSS YRFHMGIDLI RPENGSDEAL FKAFWHHTDA IVCCALKGIP  780
EFVFANRSGL EMFETATASS LKDLDWEKTL NENDRKLSYA TFTHVLQQGY CSLPAGVRMS  840
STGRTATYEQ ALAWKVLNDS EAVECIAFLF INWSLAT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.1630.0protonema
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3855180.0DQ385518.1 Physcomitrella patens class III homeodomain-leucine zipper protein HB10 (HB10) mRNA, complete cds.
GenBankDQ6572000.0DQ657200.1 Physcomitrella patens class III HD-Zip protein HB10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390752.10.0homeobox-leucine zipper protein HOX32-like isoform X2
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLQ20BL70.0Q20BL7_PHYPA; Class III HD-Zip protein HB10
STRINGPP1S70_192V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Floyd SK,Zalewski CS,Bowman JL
    Evolution of class III homeodomain-leucine zipper genes in streptophytes.
    Genetics, 2006. 173(1): p. 373-88
    [PMID:16489224]
  3. Prigge MJ,Clark SE
    Evolution of the class III HD-Zip gene family in land plants.
    Evol. Dev., 2006 Jul-Aug. 8(4): p. 350-61
    [PMID:16805899]
  4. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  5. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]