PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_17450V3.13.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 452aa    MW: 47757.5 Da    PI: 7.0801
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_17450V3.13.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.5e-134488147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Pp3c12_17450V3.13.p 44 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 88
                         789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.64E-163894IPR009057Homeodomain-like
PROSITE profilePS5129415.4083993IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-64294IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-184291IPR006447Myb domain, plants
SMARTSM007175.3E-114391IPR001005SANT/Myb domain
PfamPF002494.2E-114488IPR001005SANT/Myb domain
CDDcd001673.79E-84689No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MNAASVEMLG VMVAGSTVPG IPSVSVSEEG SKKIRKPYTI TKSRESWTEQ EHDKFLEALQ  60
LFDRDWKKIE AFVGSKTVIQ IRSHAQKYFL KVQKNGTGEH VPPPRPKRKS AQPYPQKAPK  120
CVPAQVQVSD GLNAQAVQAE SSYGTGSHVP PMSSASPSVS AWVQHSVSPN PSISYDAPGI  180
KSEVEGVSLT AVRASSNSIS GSSPGGWPQH VLPASQIAPE SCIRAAPDFT EVYKFIGSVF  240
DPGVSGHLRK LKEMSPIDRE TVLLLMRNLS INLASPDFEE HKLYLSVYVN KEIKGKSTGT  300
QDLTSAPSAA AQSSSQDTGE DTSSVSGQAG TPQSNALLVS PRSGDADHTQ QRASLLLAYS  360
DNTADAGTPR RHSYDGGGAI SASYTSSGVS PSPGDLEPVS LGPPSAALQP QIPVLTMKPE  420
RVYSAPSLPS LTSLPSLPAG LVDGSVDTWW T*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.141601e-163gametophore| protonema
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024389902.10.0protein REVEILLE 3-like isoform X1
RefseqXP_024389903.10.0protein REVEILLE 3-like isoform X1
RefseqXP_024389904.10.0protein REVEILLE 3-like isoform X1
RefseqXP_024389905.10.0protein REVEILLE 3-like isoform X1
RefseqXP_024389906.10.0protein REVEILLE 3-like isoform X1
SwissprotQ6R0H03e-87RVE3_ARATH; Protein REVEILLE 3
TrEMBLA0A2K1KLY00.0A0A2K1KLY0_PHYPA; Uncharacterized protein
STRINGPP1S46_272V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9281558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.22e-82MYB_related family protein
Publications ? help Back to Top
  1. Manfield IW, et al.
    Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis.
    Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9
    [PMID:16845059]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]