PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c12_17450V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB_related

Protein Properties

Length: 360aa MW: 38369.2 Da PI: 7.2732

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c12_17450V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.3	1.8e-13	44	88	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky Pp3c12_17450V3.2.p 44 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 88 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.2E-16	38	94	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.408	39	93	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.7E-18	42	91	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	1.3E-6	42	94	IPR009057	Homeodomain-like
SMART	SM00717	5.3E-11	43	91	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-11	44	88	IPR001005	SANT/Myb domain
CDD	cd00167	2.44E-8	46	89	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MNAASVEMLG VMVAGSTVPG IPSVSVSEEG SKKIRKPYTI TKSRESWTEQ EHDKFLEALQ 60 LFDRDWKKIE AFVGSKTVIQ IRSHAQKYFL KVQKNGTGEH VPPPRPKRKS AQPYPQKAPK 120 CGIKSEVEGV SLTAVRASSN SISGSSPGGW PQHVLPASQI APESCIRAAP DFTEVYKFIG 180 SVFDPGVSGH LRKLKEMSPI DRETVLLLMR NLSINLASPD FEEHDTGEDT SSVSGQAGTP 240 QSNALLVSPR SGDADHTQQR ASLLLAYSDN TADAGTPRRH SYDGGGAISA SYTSSGVSPS 300 PGDLEPVSLG PPSAALQPQI PVLTMKPERV YSAPSLPSLT SLPSLPAGLV DGSVDTWWT*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MNAASVEMLG VMVAGSTVPG IPSVSVSEEG SKKIRKPYTI TKSRESWTEQ EHDKFLEALQ  60
LFDRDWKKIE AFVGSKTVIQ IRSHAQKYFL KVQKNGTGEH VPPPRPKRKS AQPYPQKAPK  120
CGIKSEVEGV SLTAVRASSN SISGSSPGGW PQHVLPASQI APESCIRAAP DFTEVYKFIG  180
SVFDPGVSGH LRKLKEMSPI DRETVLLLMR NLSINLASPD FEEHDTGEDT SSVSGQAGTP  240
QSNALLVSPR SGDADHTQQR ASLLLAYSDN TADAGTPRRH SYDGGGAISA SYTSSGVSPS  300
PGDLEPVSLG PPSAALQPQI PVLTMKPERV YSAPSLPSLT SLPSLPAGLV DGSVDTWWT*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.14160	1e-163	gametophore\| protonema

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00625	PBM	Transfer from PK02532.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024389914.1	0.0	protein REVEILLE 3-like isoform X8
Swissprot	Q6R0H0	2e-81	RVE3_ARATH; Protein REVEILLE 3
Swissprot	Q8H0W3	5e-81	RVE6_ARATH; Protein REVEILLE 6
TrEMBL	A0A2K1JRD7	0.0	A0A2K1JRD7_PHYPA; Uncharacterized protein
STRING	PP1S46_272V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01520.1	4e-82	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Pp3c12_17450V3.2.p

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615]