PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_25990V3.2.p
Common NamePHYPADRAFT_87230
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 383aa    MW: 41721.5 Da    PI: 4.7021
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_25990V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.8e-12312357655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR +i +++ +L+el+P++    ++  + a++L  AveY+k+Lq
  Pp3c12_25990V3.2.p 312 SIAERVRRGKISERMKKLQELVPNS----DRQTNTADMLDDAVEYVKQLQ 357
                         689*********************9....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.15E-16305375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.053306356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.16E-12310361No hitNo description
Gene3DG3DSA:4.10.280.101.3E-16311378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-9312357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-14312362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MPEWPYPRDE KVLVNALQGP CRATNFRSNM TAPHDLNRPR HGGLQRYHSA PSSFLQCLDD  60
LMNEPDVFPQ ASSSLVDSDV LLDWADDLTP ITERGSQQMD TEKSYPRSGF NDCEQFLSSL  120
TNFSSITPSP QSQNVEPTGS LARQDGLGGF DLPAIQDSIE ENSVAIYQMP GFLFADGSMS  180
CTSSEKIGAA NSTISSAYIP EDSTHLVKEP AVCGGLWNCT TSSGSVGSSS LRGVEVTMEP  240
PLGWHGVSSL GGAVTVGEPA PRLEGLIRHS SLPATSRPFS STFELDDLQA DPSMVYLKTL  300
RANRGHATHP RSIAERVRRG KISERMKKLQ ELVPNSDRQT NTADMLDDAV EYVKQLQLQV  360
QELTNTVAEL QLLQERLGHP TS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390275.10.0transcription factor bHLH122-like isoform X1
RefseqXP_024390277.10.0transcription factor bHLH122-like isoform X1
RefseqXP_024390279.10.0transcription factor bHLH122-like isoform X3
RefseqXP_024390280.10.0transcription factor bHLH122-like isoform X3
TrEMBLA9T2I80.0A9T2I8_PHYPA; Predicted protein
STRINGPP1S155_82V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-28bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]