PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c12_3580V3.3.p

Common Name

HAP3C

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

NF-YB

Protein Properties

Length: 219aa MW: 23914.6 Da PI: 6.4186

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c12_3580V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	188.4	5.2e-59	34	130	1	97
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 vreqdrflPianvsrimkk+lP+nakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedyveplkvyl+kyre Pp3c12_3580V3.3.p 34 VREQDRFLPIANVSRIMKKALPSNAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMSTLGFEDYVEPLKVYLHKYRE 125 69**************************************************************************************** PP NF-YB 93 legek 97 legek Pp3c12_3580V3.3.p 126 LEGEK 130 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.5E-56	30	149	IPR009072	Histone-fold
SuperFamily	SSF47113	3.57E-42	37	147	IPR009072	Histone-fold
Pfam	PF00808	4.1E-28	40	104	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.5E-21	68	86	No hit	No description
PROSITE pattern	PS00685	0	71	87	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.5E-21	87	105	No hit	No description
PRINTS	PR00615	1.5E-21	106	124	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MADSYGHNPG SPENDPHSDN ESGGGHYRDH DASVREQDRF LPIANVSRIM KKALPSNAKI 60 SKDAKETVQE CVSEFISFIT GEASDKCQRE KRKTINGDDL LWAMSTLGFE DYVEPLKVYL 120 HKYRELEGEK TSVTKGGDHS AGKESNQSNQ GGIGSLGMPG GMIGMNGSMH QQGIPVSMQM 180 MQQSYGHQSP LGMMFAPHQT IPQYQMSMQS GSNQSRGL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	3e-50	33	125	5	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:11250072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU019897	1e-143	EU019897.1 Physcomitrella patens CCAAT-box binding factor HAP3-like protein (HAP3C) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024391790.1	1e-163	nuclear transcription factor Y subunit B-3-like
Refseq	XP_024391791.1	1e-163	nuclear transcription factor Y subunit B-3-like
Refseq	XP_024391792.1	1e-163	nuclear transcription factor Y subunit B-3-like
Refseq	XP_024391794.1	1e-163	nuclear transcription factor Y subunit B-3-like
Refseq	XP_024391795.1	1e-163	nuclear transcription factor Y subunit B-3-like
Swissprot	O23310	2e-69	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	A0A0I9QPN3	1e-162	A0A0I9QPN3_PHYPA; CCAAT-box binding factor HAP3-like protein
STRING	PP1S462_7V6.1	1e-162	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	6e-72	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Pp3c12_3580V3.3.p

Publications ? help Back to Top
Xie Z, et al. Duplication and functional diversification of HAP3 genes leading to the origin of the seed-developmental regulatory gene, LEAFY COTYLEDON1 (LEC1), in nonseed plant genomes. Mol. Biol. Evol., 2008. 25(8): p. 1581-92 [PMID:18453547] Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]