PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_4260V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 749aa    MW: 79515.8 Da    PI: 8.1109
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_4260V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.41.6e-29372430259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dg++WrKYGqK+ kg+++pr+YYrCt   gCpv+k+v+r+a+d+++++ tYeg+Hnh+
  Pp3c12_4260V3.1.p 372 NDGCQWRKYGQKMAKGNPCPRAYYRCTVMsGCPVRKQVQRCAKDTSILVSTYEGTHNHP 430
                        8**************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-31356430IPR003657WRKY domain
SuperFamilySSF1182901.83E-26363431IPR003657WRKY domain
PROSITE profilePS5081127.99366432IPR003657WRKY domain
SMARTSM007742.3E-35371431IPR003657WRKY domain
PfamPF031061.2E-25372430IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MGSPSGGVVE KEEENRFDSM PMTTAVVQKQ SGSSGRVDMV RKIDLSLKLA EDSDDKDEEM  60
ESDEHELNTQ TRLDHQMCSV EDTGANNHPV QIQVSQQHSD DGYAFTCEVK GCGSEVRERD  120
HLVVDSLTQR DKTGSDRSTV DNESPPPSPV GLPASAASKL KDELIAARTE ITRLRQENDR  180
FRSVLMHLTM EHHNLQMLVV ASMQRHSDST IYPVQSLLTQ DASSTPAAHG ALTSRNSDRE  240
NLRAGSPLKS TVHVKIAKHM GLVHALNSQV PKVEVTTRSR PRTGSASPER STSPTESLQG  300
CPPMLHPPSP AEESDQPRKR ASEPTEHKAN KSMKLAQNGA PSDVPVTQVE GDSNFRKARV  360
SVRTRSDAST INDGCQWRKY GQKMAKGNPC PRAYYRCTVM SGCPVRKQVQ RCAKDTSILV  420
STYEGTHNHP LSTAAAAMAS TTSAAASMFL AGSTSCDMTF MTSAPQFMQM AGSQGPNPAA  480
VPTNTASASF PSITLDLTNG PMNQLGLRLT NSSGSTTTNL QHLQGVITNG VVTSQRGSQQ  540
QFMTVPKQPA TGNTPMFLMN GTAGAAVVTN CAPLSNLGSA FSPAGTLSNQ FMQHHPSVES  600
SSGVFSKHPA GPQTQALQPS LAESVTAATA MITSDPKFTA ALAAAITSII GQQNQNSRNQ  660
FSQVVGNQTR QGQQNASSPP SAFTTVAPSG SVVSPHSSAA PGEAALSTVL KSALMSLTKD  720
QPANGLFNSV KPTPGHGFVV AAVPNRRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-21362431876Probable WRKY transcription factor 4
2lex_A6e-21362431876Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390053.10.0probable WRKY transcription factor 31
TrEMBLA0A2K1JPG30.0A0A2K1JPG3_PHYPA; Uncharacterized protein
STRINGPP1S246_89V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-52WRKY family protein