PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_5100V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 897aa    MW: 94195 Da    PI: 5.5184
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_5100V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00086350374123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        y+C+   C ksFs +s LkrH   H
  Pp3c12_5100V3.2.p 350 YVCHydGCIKSFSERSKLKRHFLIH 374
                        99*******************8877 PP
2zf-C2H215.93.7e-05382404323
                        ET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                        C    Cgk Fs   nL++H++tH
  Pp3c12_5100V3.2.p 382 CVyeGCGKAFSLDFNLRSHMKTH 404
                        66669*****************9 PP
3zf-C2H211.70.00079409434123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                        ++Cp   C+k++ + + L+ Hi + H
  Pp3c12_5100V3.2.p 409 HECPydGCDKRYCQEYKLRAHIVKeH 434
                        78********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.2321345IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.3E-6321345IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.408321345IPR007087Zinc finger, C2H2
SuperFamilySSF576673.59E-6322374No hitNo description
PROSITE patternPS000280323345IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.6E-13348372IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0065350374IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.815350379IPR007087Zinc finger, C2H2
PROSITE patternPS000280352374IPR007087Zinc finger, C2H2
SuperFamilySSF576671.69E-14360407No hitNo description
Gene3DG3DSA:3.30.160.601.9E-20373407IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.027380404IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.819380409IPR007087Zinc finger, C2H2
PROSITE patternPS000280382404IPR007087Zinc finger, C2H2
SMARTSM003550.02409434IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.2E-5411430IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280411434IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 897 aa     Download sequence    Send to blast
MDRLDEASGG ADLAVQGENC LKQIASNYVE EEDGENCSGE EEGVGRENGA DSAAPGGHGG  60
GGRHGLGESV GVEVRDSAGH SGNESERREA SGESCDEEQG GGSSGEEEEE DGDDEEEGEE  120
GEQRHGGASV AENGFANLDE RDEGKAANSE SYSGGVEGLA VERENTDSAE GTRDRVDAAE  180
KSVTQSECDP EGGGVQGGPT LRRKRGRPLK SSERQTSIRA GDESEDDSLP KRVRVRSITN  240
ICGDFAQPIK GEDMSVEEAV EANPARKRGR PRRGNRVEGV AKADEAEVSA VPSSGKRKTI  300
EAVLDSESMK WACHGRNGPI FACNAEGCKK RFVEAASLYA HARVHGDRPY VCHYDGCIKS  360
FSERSKLKRH FLIHTGEKPF LCVYEGCGKA FSLDFNLRSH MKTHTGDYHE CPYDGCDKRY  420
CQEYKLRAHI VKEHNKSGKG TKKLAKVVGN GGGGLVSVAG ANVRDAAAAK KRAVVAALQA  480
KRSKLESMKE ARESRIAELE EEKEREAFEL SRIERLLKKV EGEQRRVEGQ GGSPAMSVSA  540
SEEEEEEEEG EEGEGACPSN GTGGDTSSSD EQQSRLEYTA MGEGKDVVMF AHKLPTAHQA  600
ARLVRKGKPG GFVGKSGGPG FTPNFVAARG SAVSKGVLGE GSWKKVERLS RGCGASPCGG  660
GKVKSGQQEK RANGEAWSQG ESSVSGAGKA NGGVGGKGGG GQAEGGSGKA RVVGTKKSGA  720
STGRGGARRT NASTGTNEKG VRVSGGAEMA RMDGKGAKEV GTVSTQQQQQ GGGRESTSGA  780
FLVSMNPILV SSDHGFSPTD ARFLANEGFP SLAQGLLRER LQAKDGVKSM SGSACPPKEK  840
AYRSMNEVLH SAAEAGFVGG GGGSEEFGGE QAAPEQSFEP SAAQLFTYHE QPRLVD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C8e-342854312117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1694700GGKGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024391375.10.0uncharacterized protein LOC112289894
TrEMBLA0A2K1JPJ40.0A0A2K1JPJ4_PHYPA; Uncharacterized protein
STRINGPP1S577_1V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.21e-44C2H2 family protein