PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_5100V3.5.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 917aa    MW: 96639.9 Da    PI: 5.9038
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_5100V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00089374398123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        y+C+   C ksFs +s LkrH   H
  Pp3c12_5100V3.5.p 374 YVCHydGCIKSFSERSKLKRHFLIH 398
                        99*******************8877 PP
2zf-C2H215.93.8e-05406428323
                        ET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                        C    Cgk Fs   nL++H++tH
  Pp3c12_5100V3.5.p 406 CVyeGCGKAFSLDFNLRSHMKTH 428
                        66669*****************9 PP
3zf-C2H211.70.00081433458123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                        ++Cp   C+k++ + + L+ Hi + H
  Pp3c12_5100V3.5.p 433 HECPydGCDKRYCQEYKLRAHIVKeH 458
                        78********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.2345369IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.4E-6345369IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.408345369IPR007087Zinc finger, C2H2
SuperFamilySSF576673.71E-6346398No hitNo description
PROSITE patternPS000280347369IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.7E-13372396IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0065374398IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.815374403IPR007087Zinc finger, C2H2
PROSITE patternPS000280376398IPR007087Zinc finger, C2H2
SuperFamilySSF576671.83E-14384431No hitNo description
Gene3DG3DSA:3.30.160.602.0E-20397431IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.027404428IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.819404433IPR007087Zinc finger, C2H2
PROSITE patternPS000280406428IPR007087Zinc finger, C2H2
SMARTSM003550.02433458IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280435458IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.3E-5435454IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 917 aa     Download sequence    Send to blast
MDRLDEASGG ADLAVQGENC LKQIASNYVE EEDGENCSGE EEGVGRENGA DSAAPGGHGG  60
GGRHGLGESV GVEVRDSAGH SGNESERREA SGESCDEEQG GGSSGEEEEE DGDDEEEGEE  120
GEQRHGGASV AENGFANLDE RDEGKAANSE SYSGGVEGLA VERENTDSAE GTRDRVDAAE  180
KSVTQSECDP EGGGVQGGPT LRRKRGRPLK SSERQTSIRA GPITPKLEEP RSVRINRGVK  240
RRYPGDESED DSLPKRVRVR SITNICGDFA QPIKGEDMSV EEAVEANPAR KRGRPRRGNR  300
VEGVAKADEA EVSAVPSSGK RKTIEAVLDS ESMKWACHGR NGPIFACNAE GCKKRFVEAA  360
SLYAHARVHG DRPYVCHYDG CIKSFSERSK LKRHFLIHTG EKPFLCVYEG CGKAFSLDFN  420
LRSHMKTHTG DYHECPYDGC DKRYCQEYKL RAHIVKEHNK SGKGTKKLAK VVGNGGGVAG  480
ANVRDAAAAK KRAVVAALQA KRSKLESMKE ARESRIAELE EEKEREAFEL SRIERLLKKV  540
EGEQRRVEGQ GGSPAMSVSA SEEEEEEEEG EEGEGACPSN GTGGDTSSSD EQQSRLEYTA  600
MGEGKDVVMF AHKLPTAHQA ARLVRKGKPG GFVGKSGGPG FTPNFVAARG SAVSKGVLGE  660
GSWKKVERLS RGCGASPCGG GKVKSGQQEK RANGEAWSQG ESSVSGAGKA NGGVGGKGGG  720
GQAEGGSGKA RVVGTKKSGA STGRGGARRT NASTGTNEKG VRVSGGAEMA RMDGKGAKEV  780
GTVSTQQQQQ GGGRESTSGA FLVSMNPILV SSDHGFSPTD ARFLANEGFP SLAQGLLRER  840
LQAKDGVKSM SGSACPPKEK AYRSMNEVLH SAAEAGFVGG GGGSEEFGGE QAAPEQSFEP  900
SAAQLFTYHE QPRLVD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C9e-343094552117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236241RGVKRR
2714720GGKGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024391375.10.0uncharacterized protein LOC112289894
TrEMBLA0A2K1JPJ40.0A0A2K1JPJ4_PHYPA; Uncharacterized protein
STRINGPP1S577_1V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.21e-44C2H2 family protein