PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_1060V3.6.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 190aa    MW: 20672.7 Da    PI: 10.0619
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_1060V3.6.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.91e-12555146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                       +++WT+eE+  l  +v+++G+g W++I +        + R+  ++k++w++
  Pp3c13_1060V3.6.p  5 KQKWTAEEEAALRAGVEKYGPGKWRAIQKDSKfgpclTSRSNVDLKDKWRN 55
                       79************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.36161IPR017930Myb domain
SuperFamilySSF466891.22E-16258IPR009057Homeodomain-like
SMARTSM007171.9E-9459IPR001005SANT/Myb domain
PfamPF002493.4E-10555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-15556IPR009057Homeodomain-like
CDDcd116604.45E-22656No hitNo description
SMARTSM005261.2E-12115180IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150420.416117189IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467853.48E-13119180IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.2E-13119178IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005384.7E-10120178IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALRAGV EKYGPGKWRA IQKDSKFGPC LTSRSNVDLK DKWRNMSVSA  60
NGLGSARKPL AITGGPGMMT LMEDAVSVLP LAVLPPIDDA QALKRESADT SGDRKSLGSR  120
YDDMVFEAVI GLKEPYGSSN ASITSYIEER HAVPSNFRRL LTTKLKELAL AGKLVKVRYS  180
WKHEIANAH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.116600.0gametophore| protonema| sporophyte
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024393158.11e-128single myb histone 1-like
TrEMBLA9T7491e-123A9T749_PHYPA; Single myb histone protein
STRINGPP1S176_113V6.21e-119(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-36telomere repeat binding factor 1