PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_1060V3.8.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 213aa    MW: 23191.9 Da    PI: 8.4193
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_1060V3.8.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.61.2e-12555146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                       +++WT+eE+  l  +v+++G+g W++I +        + R+  ++k++w++
  Pp3c13_1060V3.8.p  5 KQKWTAEEEAALRAGVEKYGPGKWRAIQKDSKfgpclTSRSNVDLKDKWRN 55
                       79************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.36161IPR017930Myb domain
SuperFamilySSF466891.65E-16258IPR009057Homeodomain-like
SMARTSM007171.9E-9459IPR001005SANT/Myb domain
PfamPF002494.2E-10555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-15556IPR009057Homeodomain-like
CDDcd116601.19E-22656No hitNo description
SMARTSM005262.4E-13115180IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150422.582117185IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.9E-14119188IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.99E-15119193IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005384.2E-10120178IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALRAGV EKYGPGKWRA IQKDSKFGPC LTSRSNVDLK DKWRNMSVSA  60
NGLGSARKPL AITGGPGMMT LMEDAVSVLP LAVLPPIDDA QALKRESADT SGDRKSLGSR  120
YDDMVFEAVI GLKEPYGSSN ASITSYIEER HAVPSNFRRL LTTKLKELAL AGKLVKVRQN  180
YKVNDGSESP APVVEEPDHL ERENAIVVSD VXX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.116600.0gametophore| protonema| sporophyte
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024393158.11e-153single myb histone 1-like
TrEMBLA9T7491e-142A9T749_PHYPA; Single myb histone protein
STRINGPP1S176_113V6.21e-138(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8551659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.35e-36telomere repeat binding factor 1