PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_11550V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 735aa    MW: 81820.5 Da    PI: 5.4154
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_11550V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.5e-12529575455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h ++Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ +I++Lq
  Pp3c13_11550V3.1.p 529 NHVQAERQRREKLNKRFYALRAVVPNV-----SKMDKASLLGDAIAHINYLQ 575
                         6999**********************6.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.2E-6850226IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000832.78E-14523579No hitNo description
SuperFamilySSF474593.01E-17523591IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.355525574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9529575IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-17529590IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-16531580IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
METGPPNLWD ATDPLMVEAF IGGYGIPGYE TQVDLGCTAG QDLEQNDSVL QRRLHTLVEE  60
SSENWIYGIF WQRSLSPSGE SILGWGDGYY KGPNDSDEFD SRQTLTEEHQ LQRKKVLREL  120
QALVSCLDDD ATEDVSNTEW FYLVSMCHSF ALGVGTPGQA LALGQHIWLE EADKASNKIC  180
TRANLAKMAG IQTILCVPTM NGVVELGSTD LIHRRWDVVE HIKMVFQDST WGLDDMQIMS  240
HSQVANFDST LMPYNSSMTL DPTSIAGTTS ITSNTDPGLA DHESVDFNAR LFHTDKLLLH  300
SGGLGFNGFD HLWGQTNDFH CNDPLPDDVE NSLGQSMYDI LGKLPLQEEQ LPFLASSSFP  360
KNPESNSRHS VFQMNNVGKL PQLDHRSASL PAMEKPHSKL QPTYTFPQYS GDFEVGEMYN  420
PPGHIPTMRP KLPNQEERVQ FPLMPAVEKA SVIEKPMPLL KPIPQSPSPP VSKPAGPSVS  480
ANGLKLTDHL GQDFVDPESV TIKVNVMEAP KLPRKRGRKP ANDREEPLNH VQAERQRREK  540
LNKRFYALRA VVPNVSKMDK ASLLGDAIAH INYLQEKLHD AEMRIKDLQR VCSAKRERGQ  600
EALVIGAPKD DTQLKPERNG TRPVFGIFPG GKRFSIAVNV FGEEAMIRVN CVRDAYSVVN  660
MMMALQELRL DIQHSNTSST SDDILHIVVA KMKPTERYTQ EQLAALLERS DQATGYLTKR  720
EGSDTALQKL GNPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-39462265192Transcription factor MYC3
4rqw_B2e-39462265192Transcription factor MYC3
4rs9_A2e-39462265192Transcription factor MYC3
4yz6_A2e-39462265192Transcription factor MYC3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.2170.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024393060.10.0transcription factor MYC4-like
TrEMBLA0A2K1JM040.0A0A2K1JM04_PHYPA; Uncharacterized protein
STRINGPP1S5_289V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.14e-47bHLH family protein