PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_11550V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 544aa    MW: 60773.1 Da    PI: 7.0529
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_11550V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.1e-12338384455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h ++Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ +I++Lq
  Pp3c13_11550V3.3.p 338 NHVQAERQRREKLNKRFYALRAVVPNV-----SKMDKASLLGDAIAHINYLQ 384
                         6999**********************6.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.00E-13332388No hitNo description
SuperFamilySSF474591.96E-17332400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.355334383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-17338399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-10338384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-16340389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MLDHTNVVSR LLRCAACTLQ IHRRWDVVEH IKMVFQDSTW GLDDMQIMSH SQVANFDSTL  60
MPYNSSMTLD PTSIAGTTSI TSNTDPGLAD HESVDFNARL FHTDKLLLHS GGLGFNGFDH  120
LWGQTNDFHC NDPLPDDVEN SLGQSMYDIL GKLPLQEEQL PFLASSSFPK NPESNSRHSV  180
FQMNNVGKLP QLDHRSASLP AMEKPHSKLQ PTYTFPQYSG DFEVGEMYNP PGHIPTMRPK  240
LPNQEERVQF PLMPAVEKAS VIEKPMPLLK PIPQSPSPPV SKPAGPSVSA NGLKLTDHLG  300
QDFVDPESVT IKVNVMEAPK LPRKRGRKPA NDREEPLNHV QAERQRREKL NKRFYALRAV  360
VPNVSKMDKA SLLGDAIAHI NYLQEKLHDA EMRIKDLQRV CSAKRERGQE ALVIGAPKDD  420
TQLKPERNGT RPVFGIFPGG KRFSIAVNVF GEEAMIRVNC VRDAYSVVNM MMALQELRLD  480
IQHSNTSSTS DDILHIVVAK MKPTERYTQE QLAALLERSD QATGYLTKRE GSDTALQKLG  540
NPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-24333391361Transcription factor MYC2
5gnj_B5e-24333391361Transcription factor MYC2
5gnj_E5e-24333391361Transcription factor MYC2
5gnj_F5e-24333391361Transcription factor MYC2
5gnj_G5e-24333391361Transcription factor MYC2
5gnj_I5e-24333391361Transcription factor MYC2
5gnj_M5e-24333391361Transcription factor MYC2
5gnj_N5e-24333391361Transcription factor MYC2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.2170.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024393060.10.0transcription factor MYC4-like
TrEMBLA0A2K1JM040.0A0A2K1JM04_PHYPA; Uncharacterized protein
STRINGPP1S5_289V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.12e-43bHLH family protein