PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_11550V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 536aa    MW: 59762.9 Da    PI: 6.7033
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_11550V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH383e-12330376455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h ++Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ +I++Lq
  Pp3c13_11550V3.4.p 330 NHVQAERQRREKLNKRFYALRAVVPNV-----SKMDKASLLGDAIAHINYLQ 376
                         6999**********************6.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.45E-14324380No hitNo description
SuperFamilySSF474591.96E-17324392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.355326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-10330376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-17330391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-16332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MNGVVELGST DLIHRRWDVV EHIKMVFQDS TWGLDDMQIM SHSQVANFDS TLMPYNSSMT  60
LDPTSIAGTT SITSNTDPGL ADHESVDFNA RLFHTDKLLL HSGGLGFNGF DHLWGQTNDF  120
HCNDPLPDDV ENSLGQSMYD ILGKLPLQEE QLPFLASSSF PKNPESNSRH SVFQMNNVGK  180
LPQLDHRSAS LPAMEKPHSK LQPTYTFPQY SGDFEVGEMY NPPGHIPTMR PKLPNQEERV  240
QFPLMPAVEK ASVIEKPMPL LKPIPQSPSP PVSKPAGPSV SANGLKLTDH LGQDFVDPES  300
VTIKVNVMEA PKLPRKRGRK PANDREEPLN HVQAERQRRE KLNKRFYALR AVVPNVSKMD  360
KASLLGDAIA HINYLQEKLH DAEMRIKDLQ RVCSAKRERG QEALVIGAPK DDTQLKPERN  420
GTRPVFGIFP GGKRFSIAVN VFGEEAMIRV NCVRDAYSVV NMMMALQELR LDIQHSNTSS  480
TSDDILHIVV AKMKPTERYT QEQLAALLER SDQATGYLTK REGSDTALQK LGNPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-25325383361Transcription factor MYC2
5gnj_B2e-25325383361Transcription factor MYC2
5gnj_E2e-25325383361Transcription factor MYC2
5gnj_F2e-25325383361Transcription factor MYC2
5gnj_G2e-25325383361Transcription factor MYC2
5gnj_I2e-25325383361Transcription factor MYC2
5gnj_M2e-25325383361Transcription factor MYC2
5gnj_N2e-25325383361Transcription factor MYC2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.2170.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024393060.10.0transcription factor MYC4-like
TrEMBLA0A2K1JM040.0A0A2K1JM04_PHYPA; Uncharacterized protein
STRINGPP1S5_289V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.11e-43bHLH family protein