PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_14180V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NF-YC
Protein Properties Length: 192aa    MW: 22003.4 Da    PI: 5.2792
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_14180V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC167.41.8e-52131171102
               NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         ql +fw++q   +e+++d k h+lPlarikki+k+dedvkmi++eaPvl+skace+fileltlrsw+h+eenkrrtl+++dia a+tr di
  Pp3c13_14180V3.2.p  13 QLAQFWAQQtqeMEEVNDSKTHQLPLARIKKIMKSDEDVKMIATEAPVLFSKACEMFILELTLRSWIHTEENKRRTLQRNDIAGAITRGDI 103
                         7899**999889******************************************************************************* PP

               NF-YC  89 fdflvdivprdelk 102
                         fdflvdivprdelk
  Pp3c13_14180V3.2.p 104 FDFLVDIVPRDELK 117
                         ***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.18E-3011107IPR009072Histone-fold
PfamPF008083.0E-213598IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.0E-3636113IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MNMLHYQQIQ KQQLAQFWAQ QTQEMEEVND SKTHQLPLAR IKKIMKSDED VKMIATEAPV  60
LFSKACEMFI LELTLRSWIH TEENKRRTLQ RNDIAGAITR GDIFDFLVDI VPRDELKEED  120
LGVPWSGVPA DGVQYGGMYY PPMPGQPIHP MRAPRMMVGQ PAVPPNPQMM YQSPLAVLAP  180
EQQQQPQQQL Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B6e-5021113395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18591RRTLQRN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.25191e-143gametophore| protonema| sporophyte
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024392056.11e-138nuclear transcription factor Y subunit C-2-like isoform X3
SwissprotQ9SMP08e-64NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLA0A2K1JLU41e-101A0A2K1JLU4_PHYPA; Uncharacterized protein
STRINGPP1S158_8V6.11e-137(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-56nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Shi H,Chan ZL
    AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway.
    Plant Signal Behav, 2015.
    [PMID:24831307]
  2. Shi H,Chan ZL
    AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway.
    Plant Signal Behav, 2014. 9(7): p. e29109
    [PMID:25763489]
  3. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  4. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]