PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_14180V3.9.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NF-YC
Protein Properties Length: 257aa    MW: 28883.4 Da    PI: 8.0236
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_14180V3.9.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC166.43.7e-52541581102
               NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         ql +fw++q   +e+++d k h+lPlarikki+k+dedvkmi++eaPvl+skace+fileltlrsw+h+eenkrrtl+++dia a+tr di
  Pp3c13_14180V3.9.p  54 QLAQFWAQQtqeMEEVNDSKTHQLPLARIKKIMKSDEDVKMIATEAPVLFSKACEMFILELTLRSWIHTEENKRRTLQRNDIAGAITRGDI 144
                         7899**999889******************************************************************************* PP

               NF-YC  89 fdflvdivprdelk 102
                         fdflvdivprdelk
  Pp3c13_14180V3.9.p 145 FDFLVDIVPRDELK 158
                         ***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.05E-3217148IPR009072Histone-fold
PfamPF008085.2E-2176139IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.8E-3677154IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MATQHAHVPP SSTAQMSPHA APTIRLQQQM HYPNHAPHQQ QQLQLHYQQI QKQQLAQFWA  60
QQTQEMEEVN DSKTHQLPLA RIKKIMKSDE DVKMIATEAP VLFSKACEMF ILELTLRSWI  120
HTEENKRRTL QRNDIAGAIT RGDIFDFLVD IVPRDELKEE DLGVPWSGVP ADGVQYGGMY  180
YPPMPGQPIH PMRAPRMMVG QPAVPPNPQM MYQSPLVIAG FRIPLPSCAC ARAAAATTAA  240
TVLICRVYNS LLYALR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B7e-4962154395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126132RRTLQRN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.25191e-147gametophore| protonema| sporophyte
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024392054.10.0nuclear transcription factor Y subunit C-2-like isoform X1
SwissprotQ9SMP03e-63NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLA0A2K1JLU41e-102A0A2K1JLU4_PHYPA; Uncharacterized protein
STRINGPP1S158_8V6.11e-160(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP31517117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-55nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Shi H,Chan ZL
    AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway.
    Plant Signal Behav, 2015.
    [PMID:24831307]
  2. Shi H,Chan ZL
    AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway.
    Plant Signal Behav, 2014. 9(7): p. e29109
    [PMID:25763489]
  3. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  4. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]