PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_15010V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bZIP
Protein Properties Length: 260aa    MW: 28441.3 Da    PI: 6.4376
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_15010V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.11.2e-15142200563
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         +r++r+++NRe+ArrsR+RK++ ++eL+  +  L aeN  L ++ +  ++++a+l  e+
  Pp3c13_15010V3.4.p 142 RRQKRMISNRESARRSRLRKQQHLDELRSQISHLRAENVHLLNRYSLASQQYAQLNEEN 200
                         79*****************************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.1E-12134196No hitNo description
SMARTSM003381.1E-17138202IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.335140203IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.31E-12142196No hitNo description
PfamPF001704.6E-12142200IPR004827Basic-leucine zipper domain
CDDcd147022.58E-22143194No hitNo description
PROSITE patternPS000360145160IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGAMEVTGEE KDVQKGGSMP RAPSVDDLFV PMGRLDMHSS GMGADNEEVK EGGNTSASNV  60
CGSSSLVHSA TAEKTPSASD GARLGLNLNR SELSGLSRDS CGEISEQVHD KGGETHSSPR  120
NKKPEGQSNH TSDDDQPVID ERRQKRMISN RESARRSRLR KQQHLDELRS QISHLRAENV  180
HLLNRYSLAS QQYAQLNEEN SVLRSNAVDL RHQLQTLHPG TSGHQMMTLE PRDLSSVQPL  240
PLNLSLCSGP IEDPNWGKY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160RRSRLRK
2154161RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.110610.0gametophore| protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024392804.10.0basic leucine zipper 63-like
RefseqXP_024392805.10.0basic leucine zipper 63-like
RefseqXP_024392806.10.0basic leucine zipper 63-like
RefseqXP_024392808.10.0basic leucine zipper 63-like
TrEMBLA0A2K1JM150.0A0A2K1JM15_PHYPA; Uncharacterized protein
STRINGPP1S158_113V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.11e-24basic leucine-zipper 44