PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_15030V3.12.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bZIP
Protein Properties Length: 865aa    MW: 93696.9 Da    PI: 5.5546
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_15030V3.12.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.75e-13357416261
                          XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                           + kr  r+++NRe+A+ sRqRKk++++eLe k  +++a   +L  ++++l+ e  +l+ 
  Pp3c13_15030V3.12.p 357 DDEKRRARLMRNRESAQLSRQRKKMYVDELEGKLRTMTATVAELNATISHLTAENVNLRR 416
                          56799***********************************************99888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-15356420IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.461358421IPR004827Basic-leucine zipper domain
PfamPF001701.0E-10359417IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1709.2E-16360418No hitNo description
SuperFamilySSF579591.0E-11360418No hitNo description
CDDcd147045.78E-21361411No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006990Biological Processpositive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response
GO:0009408Biological Processresponse to heat
GO:0005635Cellular Componentnuclear envelope
GO:0005654Cellular Componentnucleoplasm
GO:0005783Cellular Componentendoplasmic reticulum
GO:0016020Cellular Componentmembrane
GO:0048471Cellular Componentperinuclear region of cytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 865 aa     Download sequence    Send to blast
MSFQNMERKI EIPDIRGDDG ETLEKEDPEI ATLSSSEASV NWENISEDWV SLFLDPATFD  60
EHATPLPSDL ESYSRFDSTL RESNDRFSPQ ELLADSLLLH SIDDQLSSDL VLQSSVNVVE  120
DIFGKDGSST KGLKRADLKH SEGEPRGQNS ATVSNFSPAP QSNATQTACA STSMEVYASS  180
SPASSLTQVS GDSSPGMEVD LWKNKEANSD LLITLEQRVN GEVSSRSESP TSPSSAMGVE  240
NGCPNVKKLQ SEGGRTGSRD VSSTGSAVRT GIPSTALQSD AFDVRQLRSI DNSFKVGFLG  300
RSGDTEDSVE DREESNKLFC REYFQSESFK LQNLEVPEDQ QSDRSDGERK ADAGVEDDEK  360
RRARLMRNRE SAQLSRQRKK MYVDELEGKL RTMTATVAEL NATISHLTAE NVNLRRQLGY  420
YYPAPGVCPP RPGMPMQVLP MGPYPGMVAG RPIYSGGQMP PVPIPRIKAK IPARSTKRAK  480
SEDTKEGGDR KRTKLKAAGA ASMAVMGLLC VAMLFSSFDQ GLNGSGGVED YTRIGNVRIG  540
GRVLTSWDEA VNPLNNTGLS SSDTEPGWVP LQEGEYGPER EGVANIHMRL AAEKVQDEAV  600
KSQISKAGLE SSARQSVDGN EDLGISKEKG SQLPPDYFSS GKVPLQMRRE IVSTNTSQSY  660
AATVFVPGAN GLVKVDGNLI IQAVMAGDKA AKKQSKNKQI VGGKKKGPVS KNLPVKVLDN  720
LAPRETKVVQ NATTGPFVIA RPLPERAKSV FGTNNPVSPV LHAGALQQWM LGGLHDSETN  780
FIASELTKIM SQPRTQLPID NSEAVAATQR TYHTFTLYDA APRGPLHSWL FAGLSTGAVH  840
VVTSACNMVY VIHTSRNFLL QINI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00345DAPTransfer from AT3G10800Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024392783.10.0uncharacterized protein LOC112290591 isoform X5
TrEMBLA0A2K1JM110.0A0A2K1JM11_PHYPA; Uncharacterized protein
STRINGPP1S158_117V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10800.11e-32bZIP family protein