PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_21530V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family E2F/DP
Protein Properties Length: 331aa    MW: 36434 Da    PI: 6.0073
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_21530V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP83.12.3e-2641122371
             E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         +k+Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i k +k++i+wkg
  Pp3c13_21530V3.1.p  41 GKGLRHFSMK---VCEKVESkGRTTYNEVADELVAEftnpdsphvspdqqqyDEKNIRRRVYDALNVLMAVGIILK-DKKDIQWKG 122
                         79********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.9E-4436127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.5E-3339122IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.58E-2142123IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023196.1E-2542122IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144582.00E-35127250IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.59E-17129191No hitNo description
SMARTSM011385.7E-48129326IPR014889Transcription factor DP, C-terminal
PfamPF087811.4E-12130190IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440744.18E-16211259No hitNo description
PfamPF087817.4E-15211257IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MVSNGIDARL SHLDDPDSPD AEVIGGKKKR GGRAGGGEKG GKGLRHFSMK VCEKVESKGR  60
TTYNEVADEL VAEFTNPDSP HVSPDQQQYD EKNIRRRVYD ALNVLMAVGI ILKDKKDIQW  120
KGFPSASLDD VADLKAESMR IRGRIERKSA YLHELQSQMT GLRNLVSRNE RLSQGNNSVP  180
HVALPFILVQ VYCQLLPELV RPICSILVSA STRPQATVEV EISEDMQVVH FDFNSTPFEL  240
HDDAYVLKAM NLQEQPDSNC PDGLDHADFD DGLGNFGEDS PPLSGVFQRS MYPAHPSSPY  300
YASMSSAGKN SSWPPVPGIL KSKVKHENAS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-3633127193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13036GGRAGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.155870.0gametophore| protonema
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5473420.0AB547342.1 Physcomitrella patens DP;3 RNA for DP transcription factor;3, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024391963.10.0transcription factor-like protein DPB
SwissprotQ9FNY28e-98DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2K1JMR80.0A0A2K1JMR8_PHYPA; Uncharacterized protein
STRINGPP1S37_43V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25111734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.18e-91Transcription factor DP