PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_21530V3.2.p
Common NameDP3
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family E2F/DP
Protein Properties Length: 289aa    MW: 31898.8 Da    PI: 6.8015
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_21530V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP63.62.8e-2041101371
             E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         +k+Lr++++k   ++ek+e+ g++t+ne  ++    d+kn+rRR+YD+lNVL+a+++i k +k++i+wkg
  Pp3c13_21530V3.2.p  41 GKGLRHFSMK---VCEKVESkGRTTYNE--QQY---DEKNIRRRVYDALNVLMAVGIILK-DKKDIQWKG 101
                         79********...*****999******9..566...8899********************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-103664IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.0E-2439101IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023196.4E-1942101IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467857.62E-1642102IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.4E-2065106IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144583.39E-40106208IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.1E-40108217No hitNo description
SMARTSM011387.8E-59108284IPR014889Transcription factor DP, C-terminal
PfamPF087812.3E-35109215IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MVSNGIDARL SHLDDPDSPD AEVIGGKKKR GGRAGGGEKG GKGLRHFSMK VCEKVESKGR  60
TTYNEQQYDE KNIRRRVYDA LNVLMAVGII LKDKKDIQWK GFPSASLDDV ADLKAESMRI  120
RGRIERKSAY LHELQSQMTG LRNLVSRNER LSQGNNSVPH VALPFILVQT RPQATVEVEI  180
SEDMQVVHFD FNSTPFELHD DAYVLKAMNL QEQPDSNCPD GLDHADFDDG LGNFGEDSPP  240
LSGVFQRSMY PAHPSSPYYA SMSSAGKNSS WPPVPGILKS KVKHENAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-2733106193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13036GGRAGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.155870.0gametophore| protonema
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5473420.0AB547342.1 Physcomitrella patens DP;3 RNA for DP transcription factor;3, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024391963.10.0transcription factor-like protein DPB
SwissprotQ9FNY27e-89DPB_ARATH; Transcription factor-like protein DPB
TrEMBLG1UDG20.0G1UDG2_PHYPA; DP transcription factor3
STRINGPP1S37_43V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.12e-81Transcription factor DP