PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_21530V3.3.p
Common NameDP3
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family E2F/DP
Protein Properties Length: 262aa    MW: 29234.7 Da    PI: 5.1818
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_21530V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP72.35.5e-231741471
             E2F_TDP 14 lklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71
                        +k++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i k +k++i+wkg
  Pp3c13_21530V3.3.p  1 MKVCEKVESkGRTTYNEVADELVAEftnpdsphvspdqqqyDEKNIRRRVYDALNVLMAVGIILK-DKKDIQWKG 74
                        589****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023195.9E-21174IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.0E-37179IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.26E-18175IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.6E-23174IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144581.39E-4079181IPR014889Transcription factor DP, C-terminal
SMARTSM011387.8E-5981257IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440748.63E-4181190No hitNo description
PfamPF087811.9E-3582188IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MKVCEKVESK GRTTYNEVAD ELVAEFTNPD SPHVSPDQQQ YDEKNIRRRV YDALNVLMAV  60
GIILKDKKDI QWKGFPSASL DDVADLKAES MRIRGRIERK SAYLHELQSQ MTGLRNLVSR  120
NERLSQGNNS VPHVALPFIL VQTRPQATVE VEISEDMQVV HFDFNSTPFE LHDDAYVLKA  180
MNLQEQPDSN CPDGLDHADF DDGLGNFGED SPPLSGVFQR SMYPAHPSSP YYASMSSAGK  240
NSSWPPVPGI LKSKVKHENA S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-301791793PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.155870.0gametophore| protonema
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5473420.0AB547342.1 Physcomitrella patens DP;3 RNA for DP transcription factor;3, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024391963.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-91DPB_ARATH; Transcription factor-like protein DPB
TrEMBLG1UDG20.0G1UDG2_PHYPA; DP transcription factor3
STRINGPP1S37_43V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.12e-93Transcription factor DP