PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_21530V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family E2F/DP
Protein Properties Length: 218aa    MW: 23972.4 Da    PI: 8.4771
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_21530V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP84.21e-2641122371
             E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         +k+Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i k +k++i+wkg
  Pp3c13_21530V3.4.p  41 GKGLRHFSMK---VCEKVESkGRTTYNEVADELVAEftnpdsphvspdqqqyDEKNIRRRVYDALNVLMAVGIILK-DKKDIQWKG 122
                         79********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-4436127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.5E-3339122IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.09E-2142123IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.7E-2542122IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM011383.0E-5129212IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.33E-17129191No hitNo description
PfamPF087816.9E-13130190IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVSNGIDARL SHLDDPDSPD AEVIGGKKKR GGRAGGGEKG GKGLRHFSMK VCEKVESKGR  60
TTYNEVADEL VAEFTNPDSP HVSPDQQQYD EKNIRRRVYD ALNVLMAVGI ILKDKKDIQW  120
KGFPSASLDD VADLKAESMR IRGRIERKSA YLHELQSQMT GLRNLVSRNE RLSQGNNSVP  180
HVALPFILVQ VYCQLLPELV RPICSILVSA SVCLCTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-3933127193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13036GGRAGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.155870.0gametophore| protonema
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5473420.0AB547342.1 Physcomitrella patens DP;3 RNA for DP transcription factor;3, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372178.11e-126transcription factor-like protein DPB isoform X2
SwissprotQ9FNY22e-73DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2K1JMR81e-152A0A2K1JMR8_PHYPA; Uncharacterized protein
STRINGPP1S74_252V6.11e-125(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-67Transcription factor DP