PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_23440V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 436aa    MW: 47419.9 Da    PI: 8.7458
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_23440V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.24.4e-344094155
             G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        kprlrWtpeLHerFv+av+qLGG++kAtPk+++++m+vk+Ltl+h+kSHLQkYRl
  Pp3c13_23440V3.2.p 40 KPRLRWTPELHERFVDAVNQLGGADKATPKSVMRIMGVKDLTLYHLKSHLQKYRL 94
                        79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.513797IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-333895IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-244095IPR006447Myb domain, plants
SuperFamilySSF466891.97E-174095IPR009057Homeodomain-like
PfamPF002499.6E-94293IPR001005SANT/Myb domain
PfamPF143791.2E-22141188IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene3DG3DSA:1.20.58.606.8E-4157210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MAMYQMKKYS SLALAPHRHH QVSSYAPTLS TGEMNPVDPK PRLRWTPELH ERFVDAVNQL  60
GGADKATPKS VMRIMGVKDL TLYHLKSHLQ KYRLGKQLHR DSSVHEANKD VSHGSSDMLG  120
TSNGASDRPL TPTSQNSQDT MQITEAIRLQ MKVQRRLQEQ LEVHKNLQLR IEAQGKYLQT  180
ILEKAKETLA GHTSASPDLK AAHAELTELA SKVIGDPGTF AASTSQQLAG LNPPELTNLA  240
SNLIQEAYNE VHNVATPTLT RQQSGRTSDT SSQKSHLTAI QEDSGGISGG CEQPSIPGVK  300
NNSCNQMQNS PGGYNSNNTS RNSDPFSPQG NGAAEMRPSP GTGASLERPT PRRGAIPTLF  360
TDTQTTTHNQ KTYQSNIYMP HTLPELRISP TVKVEGGLDL NNHHLHPATG PNCSGNSIQP  420
ARGSDLDLNA FGWER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-204096258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-204096258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-204096157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-204096157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-204096157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-204096157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-204096258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-204096258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-204096258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-204096258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-204096258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-204096258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024393441.10.0myb-related protein 2-like
RefseqXP_024393442.10.0myb-related protein 2-like
RefseqXP_024393443.10.0myb-related protein 2-like
RefseqXP_024393444.10.0myb-related protein 2-like
RefseqXP_024393445.10.0myb-related protein 2-like
RefseqXP_024393446.10.0myb-related protein 2-like
RefseqXP_024393447.10.0myb-related protein 2-like
RefseqXP_024393448.10.0myb-related protein 2-like
TrEMBLA0A2K1JN080.0A0A2K1JN08_PHYPA; Uncharacterized protein
STRINGPP1S37_226V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.17e-64G2-like family protein