PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c13_24590V3.2.p

Common Name

PHYPADRAFT_235405, PPTIM7

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

M-type_MADS

Protein Properties

Length: 392aa MW: 42563.9 Da PI: 5.573

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c13_24590V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	49.5	5.5e-16	16	51	3	38
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevavi 38 i+++ r t+skR++g+lKK +ELS+LC++evav+ Pp3c13_24590V3.2.p 16 IKSDASRAATYSKRKKGLLKKVKELSILCGVEVAVM 51 8999******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.4E-6	1	61	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.1E-15	16	53	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.45E-18	16	91	No hit	No description
PROSITE profile	PS50066	14.241	16	51	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.62E-18	16	100	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MGARNGLVSF NIGPHIKSDA SRAATYSKRK KGLLKKVKEL SILCGVEVAV MCHHPQMAGT 60 PPLLWGQPNL DSVLNRYKGV APEEREKRKL DNTTFLHNQV QKLAADLHHL VDHNRKLADH 120 LENSLWDDRL NSYSAADLQQ VAGQVLRKKK EVTDLLESAT SAVREGGCNQ LMQEYNQLTD 180 PALQIATSSS GFMLQRNHND GIPGQDLLLQ QLMSRVPAFR CSDNATMAAF VQSNLGSTPI 240 AALCMSPPTP HVDVPAESEN SIVSGRDEKY GEPGTPASSL MSLSDPQSVF TNKALSAVEP 300 LDDEFGQIDI PAVDMAPAWY ITGLASATSP SETSETYNQD ANSHVKMPAF ANDFFENWTE 360 GISFASSTGL LQCQPNQSLQ PEAGILVPRV N*

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MGARNGLVSF NIGPHIKSDA SRAATYSKRK KGLLKKVKEL SILCGVEVAV MCHHPQMAGT  60
PPLLWGQPNL DSVLNRYKGV APEEREKRKL DNTTFLHNQV QKLAADLHHL VDHNRKLADH  120
LENSLWDDRL NSYSAADLQQ VAGQVLRKKK EVTDLLESAT SAVREGGCNQ LMQEYNQLTD  180
PALQIATSSS GFMLQRNHND GIPGQDLLLQ QLMSRVPAFR CSDNATMAAF VQSNLGSTPI  240
AALCMSPPTP HVDVPAESEN SIVSGRDEKY GEPGTPASSL MSLSDPQSVF TNKALSAVEP  300
LDDEFGQIDI PAVDMAPAWY ITGLASATSP SETSETYNQD ANSHVKMPAF ANDFFENWTE  360
GISFASSTGL LQCQPNQSLQ PEAGILVPRV N*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024392908.1	0.0	MADS-box transcription factor 6-like
TrEMBL	A9RZK1	0.0	A9RZK1_PHYPA; Type I-M beta MADS-box MADS-domain protein, PPTIM7
STRING	PP1S37_353V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c13_24590V3.2.p
Entrez Gene	5922587

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]