PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_6760V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 376aa    MW: 41153.2 Da    PI: 4.8763
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_6760V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.34.8e-12165207855
                        HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         Er+RR+++N+++++Lr ++Pk +      K++Ka+i   A+ Y+++Lq
  Pp3c13_6760V3.1.p 165 SERKRRKKLNEGLFQLRAVVPKiS------KMDKASIIGDAIAYVRELQ 207
                        6*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.716157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-16161224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-15163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-16164224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.85E-13164211No hitNo description
PfamPF000101.2E-9165207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MTEDMYRKLR NLGGSSITPA TIAQQLKISL QTYCPSSLPT DTAQPNESTM NLKPTSRSDL  60
HNPDPFWLLP NFPGDFPDQR DVNANPVVTS NPQTSTSMWE PVVGNQEFST QPITAPAFKL  120
SQGDSLTNSP GENAMELPAN SSDTAEKKSV GGKRQKSVAS KNLVSERKRR KKLNEGLFQL  180
RAVVPKISKM DKASIIGDAI AYVRELQKEL EEIESEIDDL EQKCTGSIGD DPGSVEEAGT  240
GENFSSPTSS NLISGVEIQG AEHRVDSNID KLSANTTQML FPARLAQKIL EVDVARLEEQ  300
TYHFRIFCPR GPGVLVQLVQ AVESLGVQVI NSHHTAFQEN ILNSFIAEMK DPKMETEDVR  360
KTIFSAAAQY GLVQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-131652161263Transcription factor MYC2
5gnj_B2e-131652161263Transcription factor MYC2
5gnj_E2e-131652161263Transcription factor MYC2
5gnj_F2e-131652161263Transcription factor MYC2
5gnj_G2e-131652161263Transcription factor MYC2
5gnj_I2e-131652161263Transcription factor MYC2
5gnj_M2e-131652161263Transcription factor MYC2
5gnj_N2e-131652161263Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165172ERKRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.15450.0gametophore| protonema| sporophyte
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024393069.10.0transcription factor bHLH35-like
RefseqXP_024393070.10.0transcription factor bHLH35-like
RefseqXP_024393071.10.0transcription factor bHLH35-like
RefseqXP_024393072.10.0transcription factor bHLH35-like
RefseqXP_024393073.10.0transcription factor bHLH35-like
RefseqXP_024393074.10.0transcription factor bHLH35-like
RefseqXP_024393075.10.0transcription factor bHLH35-like
RefseqXP_024393076.10.0transcription factor bHLH35-like
TrEMBLA0A2K1JKZ20.0A0A2K1JKZ2_PHYPA; Uncharacterized protein
STRINGPP1S182_7V6.30.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.15e-22bHLH family protein