PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_8760V3.1.p
Common NamePHYPADRAFT_163123, PpLFY1, PPLFY1
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family LFY
Protein Properties Length: 292aa    MW: 33766.5 Da    PI: 7.4994
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_8760V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY443.81.5e-135128968385
            FLO_LFY  68 iaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkll.sedeetaldalsqeglseepvqeek 158
                        ++++Gft stL++mkdee+d ++ks++e ++ldll+Ge++Gikaavra+rr +eee  e++r+ l   ++e++     s++gl         
  Pp3c13_8760V3.1.p   1 MGQMGFTLSTLINMKDEEVDFVIKSMIEEYHLDLLMGEQFGIKAAVRAKRRLVEEEM-EQQRMDLAaRSNEKKRRLEESSDGL--------- 82 
                        689*********************************************999888754.6666644322222222222333332......... PP

            FLO_LFY 159 eaagsggeglgeaelvaaeekkseeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLD 250
                           + g+++l++ +l++ ++ +s++e kk +k++q+++++ke                    gedgeer+rehPfivtepge a+gkknGLD
  Pp3c13_8760V3.1.p  83 -LLKDGNGSLEALGLLGLTDPDSDSEGKKVAKRRQRKRRSKE-------------------VGEDGEERPREHPFIVTEPGEPAKGKKNGLD 154
                        .23334555668999999999999999999887777777766...................8999*************************** PP

            FLO_LFY 251 YLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacyk 342
                        YLfdLyeqC++fL +vq+iake+GekcP+kvtn+vfr+ak +ga yinkPkmr+YvhCYalhcLd e+sn+lr+++kergenvGaw+qacy 
  Pp3c13_8760V3.1.p 155 YLFDLYEQCGKFLEEVQHIAKEKGEKCPSKVTNEVFRHAKLTGAGYINKPKMRDYVHCYALHCLDVETSNNLRKEYKERGENVGAWCQACYF 246
                        ******************************************************************************************** PP

            FLO_LFY 343 plvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerska 385
                        plv++a++++wdid +fn++++L+iWYvPtkLrqLCh+er+k+
  Pp3c13_8760V3.1.p 247 PLVKLARQNEWDIDDLFNRNDKLRIWYVPTKLRQLCHIERMKH 289
                        ****************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016988.0E-1072289IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGQMGFTLST LINMKDEEVD FVIKSMIEEY HLDLLMGEQF GIKAAVRAKR RLVEEEMEQQ  60
RMDLAARSNE KKRRLEESSD GLLLKDGNGS LEALGLLGLT DPDSDSEGKK VAKRRQRKRR  120
SKEVGEDGEE RPREHPFIVT EPGEPAKGKK NGLDYLFDLY EQCGKFLEEV QHIAKEKGEK  180
CPSKVTNEVF RHAKLTGAGY INKPKMRDYV HCYALHCLDV ETSNNLRKEY KERGENVGAW  240
CQACYFPLVK LARQNEWDID DLFNRNDKLR IWYVPTKLRQ LCHIERMKHG E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4bhk_A1e-1271212902171FLORICAULA/LEAFY HOMOLOG 1
4bhk_B1e-1271212902171FLORICAULA/LEAFY HOMOLOG 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108115KKVAKRRQ
2115120QRKRRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.1650.0protonema
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in both male and female cones, vegetative buds and needles, but not in the roots.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0522510.0AB052251.1 Physcomitrella patens PPLFY1 mRNA for FLORICAULA/LEAFY homolog 1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024391907.10.0floricaula/leafy-like protein FL1 isoform X1
SwissprotO044071e-129NEED_PINRA; Floricaula/leafy-like protein FL1
TrEMBLA0A2K1JLC40.0A0A2K1JLC4_PHYPA; Uncharacterized protein
TrEMBLQ94IF50.0Q94IF5_PHYPA; FLORICAULA/LEAFY homolog 1
STRINGPP1S52_67V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.15e-85floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Himi S, et al.
    Evolution of MADS-box gene induction by FLO/LFY genes.
    J. Mol. Evol., 2001 Oct-Nov. 53(4-5): p. 387-93
    [PMID:11675598]
  2. Tanahashi T,Sumikawa N,Kato M,Hasebe M
    Diversification of gene function: homologs of the floral regulator FLO/LFY control the first zygotic cell division in the moss Physcomitrella patens.
    Development, 2005. 132(7): p. 1727-36
    [PMID:15743879]
  3. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]
  4. Sayou C, et al.
    A promiscuous intermediate underlies the evolution of LEAFY DNA binding specificity.
    Science, 2014. 343(6171): p. 645-8
    [PMID:24436181]