PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c14_15890V3.3.p
Common NamePHYPADRAFT_143875
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 234aa    MW: 23934.8 Da    PI: 8.7167
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c14_15890V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.64e-124388555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        h+++Er RR+ri +++  L+el+P++      K +Ka++L + ++Y+k Lq
  Pp3c14_15890V3.3.p 43 HSIAERLRRERIAERMKALQELVPNS-----NKTDKASMLDEIIDYVKFLQ 88
                        99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.23E-143692No hitNo description
SuperFamilySSF474591.57E-173697IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.4533887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-174097IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-94388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-144493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSTGSAQGSG YANPGGVPSG QPLPGIGARP RVRARRGQAT DPHSIAERLR RERIAERMKA  60
LQELVPNSNK TDKASMLDEI IDYVKFLQLQ VKVLSMSRLG GAGALPSLVN NDLPSEGANT  120
FAASAGSSGI PNPAQDGLAL TERQVTRMME DDMGSAMQYL QSKGLCLMPI SLATAISTTG  180
KGSAQATANA GERLGSAAAA NTGKSVTDPS SAGGSKEDGS ETARVTECAT QGT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14752RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.98840.0protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBM25215497Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024394843.11e-164transcription factor bHLH76-like isoform X1
SwissprotQ9ZUG93e-69BH066_ARATH; Transcription factor bHLH66
TrEMBLA9TDF91e-166A9TDF9_PHYPA; Predicted protein
STRINGPP1S209_22V6.21e-163(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.14e-59LJRHL1-like 1
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]
  2. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]