PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c14_16620V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 323aa    MW: 34728.4 Da    PI: 7.1973
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c14_16620V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.96.4e-07192233955
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r RR+ri ++   L+  +P       +K++ a++L +A++Y+k Lq
  Pp3c14_16620V3.2.p 192 ARHRRERISDRVRVLQHFVPGG-----TKMDTASMLDEAIHYVKFLQ 233
                         699*****************87.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.443183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.79E-8185231No hitNo description
Gene3DG3DSA:4.10.280.104.1E-13186241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-14187244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-12189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MVDSSSNEVD VSDHANSLPS TGMLVSNLLD RTGSLDESGL YMEADSPRGP LSPAALQLGK  60
SPKGVAIKRS FEDASEASWM PAAEATHIRA RKSAKQQLPK NVALSQEDLQ ASAAAVPYPP  120
FVAMASSGEM APLAIRSGVA PAFVPASAAN VPPLLFPTPL TLPNVPSMEE IAQSRPKRRN  180
VRISKDPQSV AARHRRERIS DRVRVLQHFV PGGTKMDTAS MLDEAIHYVK FLQQQLQTLE  240
QIGNMSDPRF MAQPGGPMMM PQMGAMNAVS PLDLNCAVYQ SYPGTSVVHP ASQPPSQWPN  300
TRPTSPFCSQ GFQDSAQEQF CH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.12530.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395722.10.0transcription factor BPE-like
TrEMBLA0A2K1JI260.0A0A2K1JI26_PHYPA; Uncharacterized protein
STRINGPP1S48_203V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-27bHLH family protein