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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Pp3c14_16990V3.16.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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| Family | ARF | ||||||||
| Protein Properties | Length: 951aa MW: 106139 Da PI: 8.2868 | ||||||||
| Description | ARF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 79.7 | 2.9e-25 | 201 | 302 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83
f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++ ++W +++iyr++++r++lt+GW+ Fv+a++L++gD v+F+
Pp3c14_16990V3.16.p 201 FCKTLTASDTSTHGGFSIPRRAAEKVfppldyaQIPPAQ--ELKARDLHDQEWHFRHIYRGQPRRHLLTTGWSVFVSAKRLQAGDAVLFT 288
99*****************************97766665..8************************************************ PP
E-SSSEE..EEEEE-S CS
B3 84 ldgrsefelvvkvfrk 99
++++++l ++++r+
Pp3c14_16990V3.16.p 289 --RDNKGQLQLGIRRQ 302
..5689999****997 PP
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| 2 | Auxin_resp | 115.1 | 6e-38 | 329 | 410 | 3 | 83 |
Auxin_resp 3 haastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
aa+t+s F+++YnPr+s+seFv++v+k++ka+ +vsvGmRf+m fete+ss rr++Gt++g+ dldp+rWpnS+WrsLk
Pp3c14_16990V3.16.p 329 YAAATSSRFTIFYNPRQSPSEFVIPVAKYQKAIChLQVSVGMRFRMVFETEESSVRRYMGTITGMGDLDPIRWPNSHWRSLK 410
6899****************************9868********************************************96 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 4.97E-47 | 190 | 328 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 3.2E-42 | 194 | 316 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.46E-23 | 200 | 301 | No hit | No description |
| SMART | SM01019 | 1.6E-23 | 201 | 303 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 4.3E-23 | 201 | 302 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 13.07 | 201 | 303 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 1.3E-33 | 329 | 410 | IPR010525 | Auxin response factor |
| PROSITE profile | PS51745 | 25.301 | 815 | 908 | IPR000270 | PB1 domain |
| SuperFamily | SSF54277 | 1.37E-6 | 831 | 894 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009725 | Biological Process | response to hormone | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 951 aa Download sequence Send to blast |
MDVSGEEDHS MCLTRSLSPG FLSVCRYMKC GSDPEFASVG GIARFAKWRW KYGWRRWNVG 60 YRLFMYLCNE RLPSVGPSVG SMAQPAEKVE KRSLNSELWH ACAGPLVLLP PVGSRVVYFP 120 QGHTEQVAAS MQKEVDAHIP NYPNLPSRLV CLLDNVTLHA DIETDEVYAQ MTLIPVPPTN 180 EKDAHMSPDI EMRSRQPTEY FCKTLTASDT STHGGFSIPR RAAEKVFPPL DYAQIPPAQE 240 LKARDLHDQE WHFRHIYRGQ PRRHLLTTGW SVFVSAKRLQ AGDAVLFTRD NKGQLQLGIR 300 RQNRQQRVMP SSVLSSDSMH IGVLAAANYA AATSSRFTIF YNPRQSPSEF VIPVAKYQKA 360 ICHLQVSVGM RFRMVFETEE SSVRRYMGTI TGMGDLDPIR WPNSHWRSLK VGWDESTAGE 420 RKKRVSLWDI EPLTFPYVLC PQPLAFRAKR PRGGRDEETD SMLKKSSFWS GENSTDALGR 480 LTFRTPSLDS WMRPKQPGLP MQENEHYRAL EAAALEEIRT TSTAKNPMSR VQSSIPSSQM 540 QFQPPHVLRQ SSQHGELHMP EASGPLLQLS SSRPQSPFEV GINMPQCSGY SEGKIHMASS 600 LSASESFPLH SMLGRTHLGC DTVQVTHVIR PGKSAQQNLS GAAIHGSSAV VRDPQVSPSW 660 YPPNRDLNQY DVSVRMNQLD TSPTSRNPGS FTFPQQGEGI GQSNLAALPA PTSSFMYRES 720 GQAQDLVQSD RRLLFGVSIE QQPLGDSHSV TSRHPQTFVK NKDAQSRFPG NIMLQGSYCP 780 STTADIPTVG GVVLDKIGVF QRCAPWSIMS PAPMRTFTKV HKLGSVGRSI DVQKFQNYSE 840 LRAELARLFN LEGLLEDPQT SGWQLVFVDN ENDILLVGDD LWEEFVSCVR SIKILSPNEI 900 LRMSREQLEI LNPVPMQLRP TCSNSEDART QLSPANASTM SLEHGHSGAG * |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ldu_A | 1e-158 | 91 | 431 | 48 | 388 | Auxin response factor 5 |
| Search in ModeBase | ||||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | DEVELOPMENTAL STAGE: Expressed in sepals at stages 11, 12 and 13 of flower development. Highly expressed in petals at stages 9-10, decreases at stage 11 and disappears after flower stage 12. In anthers, expressed at stage 11 in the tapetum, disappears early in stage 12 when the tapetum degrades and reappears throughout the anther late in stage 12 to persist at least until stage 13. In stamen filaments, expressed at stages 12 to 13, especially near the apical end of the filament. Expressed throughout the gynoecium at early stages up to stage 12, especially strongly in ovules. Expression in gynoecium decreases late in stage 12, but persists through stage 13, especially near the apical end including the style. {ECO:0000269|PubMed:16107481}. | |||||
| Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_024395054.1 | 0.0 | auxin response factor 19-like isoform X2 | ||||
| Swissprot | Q9ZTX8 | 0.0 | ARFF_ARATH; Auxin response factor 6 | ||||
| TrEMBL | A0A2K1J4P6 | 0.0 | A0A2K1J4P6_PHYPA; Auxin response factor | ||||
| STRING | PP1S48_147V6.1 | 0.0 | (Physcomitrella patens) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP856 | 14 | 56 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G30330.1 | 0.0 | auxin response factor 6 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Pp3c14_16990V3.16.p |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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