PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c14_17020V3.1.p
Common NamePHYPADRAFT_124219, WRKY1
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 396aa    MW: 43068.5 Da    PI: 10.2417
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c14_17020V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.41.1e-31323381259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+vers ed +++++tYeg+Hnh+
  Pp3c14_17020V3.1.p 323 SDEYSWRKYGQKPIKGSPHPRGYYKCSSIrGCPARKHVERSMEDSSMLIVTYEGDHNHP 381
                         69************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.2E-16275320IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.4E-33311382IPR003657WRKY domain
PROSITE profilePS5081130.905317383IPR003657WRKY domain
SuperFamilySSF1182906.67E-27320382IPR003657WRKY domain
SMARTSM007746.6E-38322382IPR003657WRKY domain
PfamPF031066.0E-27324381IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MGALEILDYN NTLGKRDRDY EVKEAACMGI QNARQLLQSL TQVRSPVVDE ECDVMAGAAI  60
SKFQKVVSLL SRTGHARFRR RTRNAAVAGY AGVFLESSNF FRENSQETSR DRIVSSGHAS  120
PSQFTPTSSS KPPQSPELQA IKYKVFPQSS RSADATPASS DPASGVHHPK PLQILHSSMM  180
QQSIPEHILR PVASAAYRPT ALPPNPFNKQ EVGSKEGVSG HSPDSSLSSG PPQSTTTASF  240
PTMSVQDARI TSLQNMKTAE QPSALPPRPQ PPTPKKKCSG KSDENGATCA ILGRCHCSKR  300
RKLRLKRTIT VRAISSKLAD IPSDEYSWRK YGQKPIKGSP HPRGYYKCSS IRGCPARKHV  360
ERSMEDSSML IVTYEGDHNH PQSSSANGGL TVQSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-223183801071WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0777580.0AY077758.1 Physcomitrella patens WRKY transcription factor 1 (WRKY1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395227.10.0WRKY transcription factor WRKY51-like
TrEMBLA9S4W90.0A9S4W9_PHYPA; Transcription factor WRKY1
STRINGPP1S48_141V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18171541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.11e-45WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]