PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c14_17330V3.3.p
Common NamePHYPADRAFT_162859
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bZIP
Protein Properties Length: 352aa    MW: 38901.5 Da    PI: 4.6179
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c14_17330V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.36.1e-12169226562
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                         kr rr+ +NR +A+rsRqRK+++++eLe   ++L  eN +L  +l+  +++++kl+ e
  Pp3c14_17330V3.3.p 169 KRKRRMSSNRASAQRSRQRKQERLDELEILTAQLRLENATLSRRLKIAEQLAKKLELE 226
                         9*********************************************999999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-9165229IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.105167230IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.0E-9169221No hitNo description
PfamPF001701.8E-9169226IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.93E-8169218No hitNo description
CDDcd147026.89E-16170218No hitNo description
PROSITE patternPS000360172187IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MCHGLFEERA RISVPEPLRG VLYEDQPEYE RYVDDYPSVY GSSSDSMPPD SPDLSDDVLA  60
GINIDYSTIV KKSDAEKTKD IGSDALPLTG SLSTWFDCIQ DDVCIVTEGA PTKSGYFAAK  120
SSSSQDALRL VEAAPESRKA FKTAAAKDQS YSQHVSKMDD EAPVLIDEKR KRRMSSNRAS  180
AQRSRQRKQE RLDELEILTA QLRLENATLS RRLKIAEQLA KKLELEKNEL AVKVEELMKE  240
LDSARHPRAQ ADSGELSEGK DVNSGICHMV DGGLISPDAC IKLEISSKGS PPTASTFGAK  300
KRNFSCIDMS RGFFQELYDE IDSDQFDASI SGVPVLLQEQ WYGSFTECLN A*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.12460.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024394730.10.0light-inducible protein CPRF2-like
RefseqXP_024394731.10.0light-inducible protein CPRF2-like
RefseqXP_024394732.10.0light-inducible protein CPRF2-like
TrEMBLA0A2K1JI590.0A0A2K1JI59_PHYPA; Uncharacterized protein
STRINGPP1S48_101V6.10.0(Physcomitrella patens)
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]