PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c14_18250V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 586aa    MW: 64313.7 Da    PI: 5.6068
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c14_18250V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.48.7e-14455551286
            trihelix   2 WtkqevlaLiearremeerlrrgklk..kplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtse........ssstcp 80 
                         Wt+ ev aLi++r em+e+++r+k+k   + W +  ++m    +gf++s++ Ck+k + l ++ykk +e +k+ +++        +s++c+
  Pp3c14_18250V3.2.p 455 WTNCEVEALIALRGEMHEEFERNKQKqgVNTWNKLHARMlgVCKGFRKSANACKKKYSILYNEYKKDRECAKDINNDafvagglpRSKKCA 545
                         *********************976553389*********9999***********************9988887754322222222688999 PP

            trihelix  81 yfdqle 86 
                         +fdq++
  Pp3c14_18250V3.2.p 546 FFDQMD 551
                         999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF006511.5E-16102200IPR000210BTB/POZ domain
SuperFamilySSF546951.67E-16102200IPR011333SKP1/BTB/POZ domain
Gene3DG3DSA:3.30.710.103.8E-18102201No hitNo description
PROSITE profilePS5009713.736104169IPR000210BTB/POZ domain
SMARTSM002253.9E-14104201IPR000210BTB/POZ domain
PfamPF138376.6E-11453551No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MVAEGDGGDC GAEFRWLQEG EDEEVAMAMV SVPGAAGDGA PGAANNGGKL LSRKRNLKVP  60
RVSGEPTLKS LQVQVKRLEQ QREFLSLLRP VLASDVPDVG AAYADVELQA CDGSPVYAHK  120
AVLAVKSKEF HEAFRANADV KVIEVSEMTP QELKVFVTFL YTGTISNNIS LECMPTFFRA  180
AEKYKVQFLA EVCEDTLVSN LSRQNAISTF DIVKKHCSSA VRESVLVKAM KMGEISTYDE  240
YKHYTQKDPG LLLELYELLS ERIGPLLAKR RRISTDIGTS EQDGVNNAFI LYDGCDGKSD  300
SDDESSEDHL RADEREMKPE NEIASGAVML LNGSSRDGGN GCSSAGGGVF WQGGQPIPPQ  360
HGRTYSAGYD RAPGPRPTYD GQMMSPAYVV PPYLSPMHMG GSLPRGGFVG AGAQGALGMM  420
ERPVGGDELM VQDTRGKKLP VEAQTKIEGR RGQNWTNCEV EALIALRGEM HEEFERNKQK  480
QGVNTWNKLH ARMLGVCKGF RKSANACKKK YSILYNEYKK DRECAKDINN DAFVAGGLPR  540
SKKCAFFDQM DMWYQNRPRL KIDANQGEHL ESPCTSADDV DLKEE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268272KRRRI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.5615e-35gametophore
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395616.10.0uncharacterized protein LOC112291890
TrEMBLA0A2K1JIC60.0A0A2K1JIC6_PHYPA; Uncharacterized protein
STRINGPP1S48_17V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-07Trihelix family protein