PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c14_19410V3.1.p
Common NamePHYPADRAFT_161559
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 241aa    MW: 26966.9 Da    PI: 9.398
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c14_19410V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.94.3e-14128217199
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                         f+k l++s+++   ++ l   f++eh        +  ++l   +  +We  +    ++g+  l++GW++F  +n+L +gD ++F+l++ ++
  Pp3c14_19410V3.1.p 128 FIKSLLHSHTSGGFWMGLQSAFCKEHlpV----DDERIML-EANDLEWECIY--LAGKGG--LSGGWRGFSIDNQLADGDCCIFELVNPRR 209
                         899***********************532....2223555.55889****99..777777..9**********************997666 PP

                         E..EEEEE-S CS
                  B3  90 felvvkvfrk 99 
                         f  vv++fr 
  Pp3c14_19410V3.1.p 210 F--VVHIFRV 217
                         6..*****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-20123218IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-17124217IPR015300DNA-binding pseudobarrel domain
CDDcd100172.87E-17126216No hitNo description
PROSITE profilePS5086310.715128218IPR003340B3 DNA binding domain
SMARTSM010192.2E-15128218IPR003340B3 DNA binding domain
PfamPF023621.2E-11128217IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MADEDETELT YEEKRKQRVE ENEKKMGELG LLKLAKSVSE GNGGALLKKS TKRKMMSSLE  60
ELRLEARRSS RVAAKPAVTY NDAPVLSGLR EKVETRHGLP KQYLSDKPRM AAIDAAEAVF  120
KDLRNPAFIK SLLHSHTSGG FWMGLQSAFC KEHLPVDDER IMLEANDLEW ECIYLAGKGG  180
LSGGWRGFSI DNQLADGDCC IFELVNPRRF VVHIFRVSRD ESLKPVKAGR EKSNKKAGKR  240
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14754KKSTKRKM
26271RLEARRSSRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.86440.0gametophore| protonema| sporophyte
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395307.11e-177B3 domain-containing protein At3g19184-like
TrEMBLA0A2K1JIE21e-176A0A2K1JIE2_PHYPA; Uncharacterized protein
STRINGPP1S34_82V6.11e-176(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-31B3 family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]