PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c14_20800V3.7.p
Common NamePHYPADRAFT_161610
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 775aa    MW: 85091.1 Da    PI: 8.4326
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c14_20800V3.7.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.61.1e-134645611199
                         HHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SE CS
                  B3  11 lksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..se 89 
                         + s+++v+  +f+++           g+ ++++ +l+l d++g + + +   r + +ry+l++GWk+Fv+ ++++e D++v++l++r   +
  Pp3c14_20800V3.7.p 464 NPSAIIVMRSSFVKNTyacfvtvkcaGLLPTKPAELSLVDTDGYVRKANW--RPG-KRYMLGAGWKDFVETHNVQESDVCVLELIDRsqVN 551
                         44566677777775448888888888888999***********9999999..555.59*************************99662455 PP

                         E..EEEEE-S CS
                  B3  90 felvvkvfrk 99 
                          +l+v+vfr+
  Pp3c14_20800V3.7.p 552 CKLLVHVFRA 561
                         5678888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.7E-13460571IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-15463567IPR015300DNA-binding pseudobarrel domain
CDDcd100179.35E-13470560No hitNo description
SMARTSM010190.0012475562IPR003340B3 DNA binding domain
PfamPF023621.4E-10479561IPR003340B3 DNA binding domain
PROSITE profilePS508638.741498562IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MFGLVAPKRF YVSVFDKSGM EKVSTRQHLN SMGSTGTAMD KESELAPQVS KPMSGGAEDP  60
CTPMNLAHSK GATRRARSND TSQHNSQLLV SNDVGALPSR NASDQNGNQK GILCNGVSIN  120
SHLPNEPVDR HVTEGIVMNE SSDESEDSVQ MLLAKAVLAK AKQRKLNKRK MSCHNTRQAK  180
MALEAISPEC VFKNEMSQSF EDKIRAMKSK CRNAEIVSNS LARLSSDNVT SSLRDDFATS  240
HDGIEADLAI REEPLEDGRV LMNGSSRHQV GVSKAGVDLR RDEPHNHHDR VNGLPDEVMK  300
EIPLPGHKQN DVMTQMTTPR VATAQDPILN GVQGEEAERS DQFSPVFEPA LVKSEPGVSF  360
VEDLGPAMVA AGAHVHENKI CANCGLPTDA ENLKSEFVTP EVSEIPKDNN LILDAVTSEE  420
PESTHAKGPN SSAPIPFSGD DSTTEYQKRW AHEAAKSFSA NMKNPSAIIV MRSSFVKNTY  480
ACFVTVKCAG LLPTKPAELS LVDTDGYVRK ANWRPGKRYM LGAGWKDFVE THNVQESDVC  540
VLELIDRSQV NCKLLVHVFR AREMEREHEQ SIPAPGATPV IEASPRARTH AEGKRGRAAN  600
GLLLPGLLPS TRKRRKSIAK SLNNEVVEIG LPVPSTSPDD EVAEPGLTFE RGKPTKQGSA  660
TKRVRRHSMS THTQIKKVAK DETRSSPRGA VVEKQQDLLA TPSQKSHKHY TVKNLIDRRR  720
GLQGVLFLVE LKETVILQGG SKKKPKMSAT QDGRGRWWVP HHHFNHDFSS CYIE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163170RKLNKRKM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395180.10.0uncharacterized protein LOC112291658 isoform X2
TrEMBLA9RXK30.0A9RXK3_PHYPA; Predicted protein
STRINGPP1S34_235V6.10.0(Physcomitrella patens)
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]